BAC Information

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BAC

Clone NameMSMg01-368B16
Chromosome3 (Build37)
Map Location 101,006,163 - 101,157,214
singlet/doubletdoublet
Overlap geneLOC668578, LOC668583, LOC669017, Cd2, LOC100043490
Upstream geneGdap2, LOC195514, 4930431B09Rik, OTTMUSG00000007026, Man1a2, Vtcn1, Trim45, Ttf2, Igsf2, Ptgfrn
Downstream geneIgsf3, LOC100043032, Atp1a1, LOC100043036, BC037703, Slc22a15, Nhlh2, LOC100043047, Casq2, Vangl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-368B16.T7 (MSMg01no368_b16.b1)MSMg01-368B16.TJ (MSMg01no368_b16.g1)
ACCAG475413AG475414
length741741
length of high quality
(start - end)		601 (46 - 646)513 (71 - 583)
definitionCHROMAT_FILE: MSMg01no368_b16.b1 PHD_FILE: MSMg01no368_b16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:27 2005CHROMAT_FILE: MSMg01no368_b16.g1 PHD_FILE: MSMg01no368_b16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,006,163 - 101,006,759)(101,156,702 - 101,157,214)
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTAATCTTGCGTAATTTTTTAGAAAAACTCATGGGCAAATCTACG
GGGGAGGGACGCTGAGAGTGTATGCCACAGTTTTGTAGCAAAACAAAACA
AAACAAAAAACTGGGAAGTAACTGAGAGAGCCAAATTGGTTGTTTGTCTT
AATGCTTATCTGAGTGTGGGCATCACACCACGATCTCGGGACTGGACGTC
TTCACACTGAGACAGGCAGCAGGAACAGCAGCTATGACAAATAACAGAGT
AATCTAATTCTCATGCCCCTAGTAGGCGAAAGCTTTCAGCGAGCCCCATG
CTATTGACAGAAAAGGAGCAATTTTATCTCTGCCTGTTGCAATGTTGATG
TCTGAACATGGTAATGACCTTCATGGACAGAATAACCACACGAAACGGTC
AAATGCTCTTTTTCCACAATCAAACCACTAATGGATGCCTGCTAACCCTG
GCAGCTCTGTACCTTTTCCTTGACACTCTTCTGTGCCGAGTCTTCTGAAG
ATAGACTCTTTTGCATCTCTTGGGACCAGATGTCTATATTTGATTCCCAA
TGTTTGTTCCTAAGTCTTCTCACCTCACCCAGGTCTCCATCACTGGGGAA
TAAGCAAGTCAAACAAGATAGGTGCAAGACATGGCACACAGCCAACTGTT
ATTAGGAAAGAGAGAGGGTACCCCATATTCTTGGGTAATTN

CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTAGGCCAGCTTGGTCTACATATAGAGTTCT
TAGTCAGCCAGGGCTATGTAGTGAGACTCTGCCTCAAAGGTAAAAATAAT
ATTTTTATTGATGTGTATGTATGTATCTTTGTATGCCATGTGCATTCAGG
TACCCAGAGGCCAGACAGGGCACTGAATGCCATGAGCTGGAGTTACAGGA
GGTTGTGAGTTTGTCCTACCAGCGATCAGCACGAGGCCTTTGTCCTGTGG
GATGCTGGCTGTGACTGAACTCCTGTCCCAGCCATGTGCTTCTGTGGCCA
CCTCTGTGTCATCTTCTGGACTCATTTCTCAGCTCTCAGTTCAGTGCTCT
GGAAGAACAGTGGGCACTCTTAACCATGGGACTGTCTCTCCAGGGACCCA
ATAAGAAAGAATACTTCTAAAAATATAAATTTAACATTAATGTAGTAGCA
TTCTTTGATGTAGAACCCAACTACCTAAAAATGTGTTTTATTTCATTTGT
ATTACTCATGACAATTTGATTGGTATATTTCAGNTTGTTTTTTTTGTTTT
TGGTTTCTAATCTAGGAGAGCTACCCCTGGCTTTTGTTTGTTTGCTTGTT
GNGCTTTTTTTTGTTTTGGTTTTCTTAAATTATCTGACTGGTTAATGACA
CCTGCCCTAATTTAAAAGTCCAACTACTGTTTTGAAATATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no368_b16.b1 MSMg01no368_b16.b1 CHROMAT_FILE:
MSMg01no368_b16.b1 PHD_FILE: MSMg01no368_b16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:27 2005
         (601 letters)



>mm_chr3_101005959_101006959
          Length = 1001

 Score = 1100 bits (569), Expect = 0.0
 Identities = 590/597 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctaatcttgcgtaattttttagaaaaactcatgggcaaatctacgggggaggga 64
           ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctaatcttgggtaattttatagaaaaactcatgggcaaatctacgggggaggga 264

                                                                       
Query: 65  cgctgagagtgtatgccacagttttgtagcaaaacaaaacaaaacaaaaaactgggaagt 124
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cgctgagagtgtatgctacagttttgtagcaaaacaaaacaaaacaaaaaactgggaagt 324

                                                                       
Query: 125 aactgagagagccaaattggttgtttgtcttaatgcttatctgagtgtgggcatcacacc 184
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 325 aactgagagagccaaattggttgtttgtcttaatgcttatcagagtgtgggcatcacacc 384

                                                                       
Query: 185 acgatctcgggactggacgtcttcacactgagacaggcagcaggaacagcagctatgaca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acgatctcgggactggacgtcttcacactgagacaggcagcaggaacagcagctatgaca 444

                                                                       
Query: 245 aataacagagtaatctaattctcatgcccctagtaggcgaaagctttcagcgagccccat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aataacagagtaatctaattctcatgcccctagtaggcgaaagctttcagcgagccccat 504

                                                                       
Query: 305 gctattgacagaaaaggagcaattttatctctgcctgttgcaatgttgatgtctgaacat 364
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 505 gctattgacagaaaaggagcaattttatctctgcctgttgcaatggtgatgtctgaacat 564

                                                                       
Query: 365 ggtaatgaccttcatggacagaataaccacacgaaacggtcaaatgctctttttccacaa 424
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 565 ggtaatgaccttcatggacagaataaccacatgaaacggtcaaatgctctttttccacaa 624

                                                                       
Query: 425 tcaaaccactaatggatgcctgctaaccctggcagctctgtaccttttccttgacactct 484
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 625 tcaaaccactaatggatgcctgctaaccctggcagctctgtgccttttccttgacactct 684

                                                                       
Query: 485 tctgtgccgagtcttctgaagatagactcttttgcatctcttgggaccagatgtctatat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tctgtgccgagtcttctgaagatagactcttttgcatctcttgggaccagatgtctatat 744

                                                                    
Query: 545 ttgattcccaatgtttgttcctaagtcttctcacctcacccaggtctccatcactgg 601
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttgattcccaatgtttgttcctaagtcttctcacctcacccaggtctccatcactgg 801


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1001
Length adjustment: 10
Effective length of query: 591
Effective length of database: 991
Effective search space:   585681
Effective search space used:   585681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no368_b16.g1 MSMg01no368_b16.g1 CHROMAT_FILE:
MSMg01no368_b16.g1 PHD_FILE: MSMg01no368_b16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:27 2005
         (513 letters)



>mm_chr3_101156500_101157412
          Length = 913

 Score =  899 bits (465), Expect = 0.0
 Identities = 501/513 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   taggccagcttggtctacatatagagttcttagtcagccagggctatgtagtgagactct 60
           ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 715 taggccagcctggtctacatatagagttcctagtcagccagggctatgtagtgagactct 656

                                                                       
Query: 61  gcctcaaaggtaaaaataatatttttattgatgtgtatgtatgtatctttgtatgccatg 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 655 gcctcaaaggtaaaaataatatttttattgatgtgtatgtatgtatgtttgtatgccatg 596

                                                                       
Query: 121 tgcattcaggtacccagaggccagacagggcactgaatgccatgagctggagttacagga 180
           ||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 595 tgccttcaggtacccagaggccagacagggcgctggatgccatgagctggagttacagga 536

                                                                       
Query: 181 ggttgtgagtttgtcctaccagcgatcagcacgaggcctttgtcctgtgggatgctggct 240
           |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 535 ggttgtgagtttgtcctaccagtgatcagcacgaggcctttgtcctgtaggatgctggct 476

                                                                       
Query: 241 gtgactgaactcctgtcccagccatgtgcttctgtggccacctctgtgtcatcttctgga 300
           ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 475 gtgactgaactcctgtcccagccatgtgcttctgcagccacctctgtgtcatcttctgga 416

                                                                       
Query: 301 ctcatttctcagctctcagttcagtgctctggaagaacagtgggcactcttaaccatggg 360
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 ctcatttctcaactctcagttcagtgctctggaagaacagtgggcactcttaaccatggg 356

                                                                       
Query: 361 actgtctctccagggacccaataagaaagaatacttctaaaaatataaatttaacattaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 actgtctctccagggacccaataagaaagaatacttctaaaaatataaatttaacattaa 296

                                                                       
Query: 421 tgtagtagcattctttgatgtagaacccaactacctaaaaatgtgttttatttcatttgt 480
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 tgtagtggcattctttgatgtagaacccaactacctaaaaatgtgttttatttcatttgt 236

                                            
Query: 481 attactcatgacaatttgattggtatatttcag 513
           |||||||||||||||||||||||||||||||||
Sbjct: 235 attactcatgacaatttgattggtatatttcag 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space:   454209
Effective search space used:   454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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