Query= MSMg01no369_i11.b1 MSMg01no369_i11.b1 CHROMAT_FILE:
MSMg01no369_i11.b1 PHD_FILE: MSMg01no369_i11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:17 2005
(247 letters)
>mm_chr3_148036256_148036902
Length = 647
Score = 420 bits (217), Expect = e-122
Identities = 239/247 (96%), Gaps = 2/247 (0%)
Strand = Plus / Minus
Query: 1 caaaacatagaatataagtgaatgatgtgctagtggccattagtaaaaactttcttgcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 caaaacatagaatataagtgaatgatgtgctagtggccattagtaaaaactttcttgcct 490
Query: 61 attatatgaccttagtctaatggcctagagatcatggttccaatataggagtcctctttg 120
||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 489 attatataaccttagtctaatggcctagagatcatggttcca--ataggagtcctctttg 432
Query: 121 gacttttcatacctctgtgttaacaggtcaagagaggaacacagtattaactggtgtaat 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 gacttttcataactctgtgttaacaggtcaagagaggaacacagtattaactggtgtaat 372
Query: 181 taactcagactaccaatgaataactagataactatttctcgctgtaagtaaggatgtatt 240
|||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 371 taacccagactaccaatgaataactagataactatttcacactgtaagtaaggatgtatt 312
Query: 241 tctagaa 247
| |||||
Sbjct: 311 tttagaa 305
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space: 151844
Effective search space used: 151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no369_i11.g1 MSMg01no369_i11.g1 CHROMAT_FILE:
MSMg01no369_i11.g1 PHD_FILE: MSMg01no369_i11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:17 2005
(423 letters)
>mm_chr3_147843104_147843925
Length = 822
Score = 764 bits (395), Expect = 0.0
Identities = 416/423 (98%), Gaps = 1/423 (0%)
Strand = Plus / Plus
Query: 1 tttaccacatagctagaacatgattgagagagatttttctccaattctatgggttttatt 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttaccacgtagctagaacatgattgagagagatttttctccaattctatgggttttatt 260
Query: 61 ttcaacctttttatccttgagttttgaaggttaaaattagttaattgtggaaatacaatt 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 ttcaac-tttttatccttgagttttgaaggttaaaattagttaattgtggaaatataatt 319
Query: 121 tacctattgttctcttcttgttgttcttgttgttgttgttttctcttccttcttcttctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tacctattgttctcttcttgttgttcttgttgttgttgttttctcttccttcttcttctc 379
Query: 181 aatctcttctttcttcttcttctcttttttctcttttcctacccgtccttccttctcctt 240
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 380 aatctcttctttcttcttcttctcttttttctcttttcctacccctccttccttctcctt 439
Query: 241 tttttttcttctccttccctaaaagagaaatatttttcatctttctcttcctcctgcttt 300
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttttctgcttctccttccctaaaagagaaatatttttcatctttctcttcctcctgcttt 499
Query: 301 cccttattatccctgtgcttctccctgcccccgcccgactcctccttcttcttttacttg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cccttattatccctgtgcttctccctgcccccgcccgactcctccttcttcttttacttg 559
Query: 361 tcctcctcctcctcttcttttcttttttattgatagcatttctagtttttatatttggaa 420
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 560 tcctcctcctcctcttcttttcttttttattgattgcatttctagtttttatatttggaa 619
Query: 421 acc 423
|||
Sbjct: 620 acc 622
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 822
Length adjustment: 9
Effective length of query: 414
Effective length of database: 813
Effective search space: 336582
Effective search space used: 336582
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
