BAC Information

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BAC

Clone NameMSMg01-369J08
Chromosome3 (Build37)
Map Location 89,815,522 - 89,995,118
singlet/doubletdoublet
Overlap geneUbap2l, 4933434E20Rik, 1700094D03Rik, Tpm3, Nup210l
Upstream geneAsh1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3, LOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She, Il6ra, Atp8b2, LOC668102, Hax1
Downstream geneRps27, Rab13, Jtb, Creb3l4, LOC100042397, Slc39a1, Crtc2, Dennd4b, Gatad2b, Slc27a3, Ints3, Npr1, LOC668141, Ilf2, Snapap, 2500003M10Rik, S100a1, S100a13, S100a14, S100a16, EG628324, S100a3, S100a4, S100a5, S100a6, S100a7a, S100a8, S100a9, LOC668165, LOC383949, Pglyrp4, LOC329706, EG545541, LOC635737, EG668174, LOC668179, LOC635756, 4930529C04Rik, 9130204L05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369J08.T7 (MSMg01no369_j08.b1)MSMg01-369J08.TJ (MSMg01no369_j08.g1)
ACCAG476534AG476535
length799787
length of high quality
(start - end)		138 (84 - 221)143 (57 - 199)
definitionCHROMAT_FILE: MSMg01no369_j08.b1 PHD_FILE: MSMg01no369_j08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:21 2005CHROMAT_FILE: MSMg01no369_j08.g1 PHD_FILE: MSMg01no369_j08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,815,522 - 89,815,659)(89,994,976 - 89,995,118)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCA
GGACATTTCCACAGAAACACACAGGAACCCTGTGTCTAAAACCAAACAAC
CAAATAAAAAAACCTTAAGACATTAAAAATATCCTAATCATCTGAATAAG
CTGACTAGAGCTTCCATTAATTCAAATTACTCCTGTAATACTGTCAAATT
TGCCTTACTAAGAGTAAAGGTTGAAAGCACAAAATTTTGGGGATTCAGGG
GAACTTATCAGTAAATAAGATAATAAGAGGTTGATACTGATTTTTTTATT
TTTTAAAAAAAACTGAGGTTGGTTATATATCTATGCCATAACACATTATC
ATTATAAATGTGTATATTCCTATATATTTATTAATTTGAGTTTAGATATT
ATGATTTTCACCACGCTTTTCCTGTTATATTTTGTTATATATTTCTTTCC
TATTACTTTCTAATAATGTTTATGAATACTCGCTCTTTTCTGAATTACTC
TTTCTTACCATGCCTTATTTTTATATTTCCCACATTTTTTTTGGTTTTTC
TTTACCCATCAATCTTTTTCTATCTTCTAATCTGTTTCCTTTTATTTTTT
ATCCTGCCCCCTCCCTCTTTTATTTTCTCTTTTTTCCCCCTTTTTTCCCT
TTTTTTTTTCTTTATCCCTTCCTTTTTTTTTTTTTTCTTTCCCCTTTTTC
TTCTTTATTTCTTTCCTTTTATATTATTTTCTTGTCTCTTTTTTTCTTTT
CTCCCCATTCCTTTATTTCTTTCACCCACTTCTTTTTCTCTTTTTTCCN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTTTCTCAA
AATTCCACGCCTGTATTACCACCCGTGGCTCATTATTTTCATTCTGACTG
AACAAATCGAGGCCGGATTCCAAGCTCAGAGTGTAAGAGGAATCTGCTGA
AACTGCCGCAGAACACTGAGTTAACTTGTCAGGTTTCTACTGCGCTGCCA
ACCACGCCTCCTTGACCTCCATACCTGTTCAGATTCTATATAAAGCCGAG
TATTGTGGGTGTGTAATTTTTCTCCCACGCTATTATAAAACTCTACAATA
ATTTTTTTTTTCATGCCCAAAGGAAAGGCTGACAGGGTCCTTCCTTGTGT
TGTGTATAGCTTGGGGTATCTGCTCAATCGAAGGTATGTCACTGGCGCCC
ACCTGTTTTATACTTTACCCATTATTATAGATATTGTTCCTGGCTTATTA
TTTGTTATTATACTCCACACTTTATTTTTTTTTTTCCTAATTCTTTGTTT
TTCTTTTGTCCGTCTGTCCTTTTCTATTTTCTTTTTTTCCTCTGTTTGTC
CTTTTTTTCCCTTTGCTTTTTTTTTTTTTGTTTTTCCCCCTTTTTTATTG
TTCTTTTCATCTCTTGTTTTTTTTATCTTTTTTATTTTCTTCCTTTTTAT
CTTCTTTTTCCTCCTCTCCTTTTTTTTTCTCTTTTTTCATCCTCCTACAT
ATTCCTCTCTCTCTCTTCTTTCCTTTTTCTTTTCTCCTTTTTTTTCTTTT
CCCCCCCCTTTCTTACCCTCTCTTCTCTCTTTCCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_j08.b1 MSMg01no369_j08.b1 CHROMAT_FILE:
MSMg01no369_j08.b1 PHD_FILE: MSMg01no369_j08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:21 2005
         (138 letters)



>mm_chr3_89815322_89815859
          Length = 538

 Score =  267 bits (138), Expect = 2e-76
 Identities = 138/138 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtctaaaaccaaacaaccaaataaaaaaaccttaagacattaaaaatatcctaatcatct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtctaaaaccaaacaaccaaataaaaaaaccttaagacattaaaaatatcctaatcatct 260

                                                                       
Query: 61  gaataagctgactagagcttccattaattcaaattactcctgtaatactgtcaaatttgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaataagctgactagagcttccattaattcaaattactcctgtaatactgtcaaatttgc 320

                             
Query: 121 cttactaagagtaaaggt 138
           ||||||||||||||||||
Sbjct: 321 cttactaagagtaaaggt 338


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 138
Length of database: 538
Length adjustment: 8
Effective length of query: 130
Effective length of database: 530
Effective search space:    68900
Effective search space used:    68900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no369_j08.g1 MSMg01no369_j08.g1 CHROMAT_FILE:
MSMg01no369_j08.g1 PHD_FILE: MSMg01no369_j08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:21 2005
         (143 letters)



>mm_chr3_89994776_89995318
          Length = 543

 Score =  261 bits (135), Expect = 1e-74
 Identities = 141/143 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acgcctgtattaccacccgtggctcattattttcattctgactgaacaaatcgaggccgg 60
           |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 343 acgcctgtattaccacccgtggctcattattttcattctgacagaagaaatcgaggccgg 284

                                                                       
Query: 61  attccaagctcagagtgtaagaggaatctgctgaaactgccgcagaacactgagttaact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 attccaagctcagagtgtaagaggaatctgctgaaactgccgcagaacactgagttaact 224

                                  
Query: 121 tgtcaggtttctactgcgctgcc 143
           |||||||||||||||||||||||
Sbjct: 223 tgtcaggtttctactgcgctgcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 143
Length of database: 543
Length adjustment: 8
Effective length of query: 135
Effective length of database: 535
Effective search space:    72225
Effective search space used:    72225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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