BAC Information

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BAC

Clone NameMSMg01-369J09
Chromosome3 (Build37)
Map Location 111,445,591 - 111,445,976
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043190, LOC668712
Downstream geneLOC625585, EG229746, LOC668717
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369J09.T7 (MSMg01no369_j09.b1)MSMg01-369J09.TJ (MSMg01no369_j09.g1)
ACCAG476536AG476537
length746779
length of high quality
(start - end)
183 (159 - 341)386 (67 - 452)
definitionCHROMAT_FILE: MSMg01no369_j09.b1 PHD_FILE: MSMg01no369_j09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:21 2005CHROMAT_FILE: MSMg01no369_j09.g1 PHD_FILE: MSMg01no369_j09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATATCGTATGTTC
CTTAAGGAATTTTCTATTTCTGGGTTGTAAAACATAATATCTGATTTTTC
AATGGATTAATTTTCTAATATTTGTAATAGAGATACTGATCCTGAAAGAT
AGCCTGGCATACTTATAGGAGCACATGCTCAACTATGTTCATAGTGGCCT
TATTTGCGATAGCCAGAAGCTGGAAATAATGCAGATGTCCTACAATGAAA
GAATGGAAACAGAAAATGTGGTACAATGGAATACTACTCAGCTATTAAGA
AGGAGTTTTTTATGAGGTTTGCATGCCAATGGATGGAACTACAAAATTTC
ATCTTGAGTGAGGGGGGGCGGACCCAAAGGACCTGCATGGTATGTACTCA
CTAATAAGTGGATATTAGTCCCCAAATACAGACTCACCAGGACACCGGCC
CTAGGACTCATGAAGGTTAACAAGTCCTAGTACTCCAGTGAGAATGGCCT
TACCCCACCCCGGAAGATTGAACAAACCCCCGTCCTCCGCCTGGCTTACC
ACGCCTACACTTTTCCTGGTACACCGGTCTCCTCCCCCCTCCTTTTTCTT
CTCCCCCCCCTTCCCCTCGCCTCTCTTTCCCCTCTCCTTCCCCCCCCTCT
CCCCCCTCCTCTTCTTTTTCCCCCCTTCCCCCCTTCCCCCCCTCCTCCCT
TCCTTCCCCTCCCCCCCTCCCCCCCTCCTCCCCACCCCTTTCTTCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTATTGCTAGATTAGTAGTATTCAAAACATACAT
GTTAAAGGAGAAGATGTTAAACATAACATTTAGGATTGGGATAATGTTTA
TGTCTTGCATGTTTTTGCAAAAAGATCTCTTTATTCTATATCTGATGGCT
ACTCTGCAAATTACTCTTCAGTTAGTTCCACAATTCAAATTATCAACATA
ATTAAATTTAGCATTTTTATTAAAAGACTAAATTTAATCTTTTAATTTTT
AGTATTGGCTTACTTACTTAATATCCTCATAAAATGTCATAAAACTAGCT
TGATATGGTAGCTCAAATGTTTTTAGTCCCAGCACTTGTGATGCAGGGGC
AGATGTTCCGGCAGAGGTAGGTATATCTTTATGAGTTCAAGTTCAGCTTG
GTTTACATAATGAGGTCCTACTTCATAGAGAAATATATTGAAACGTGTTG
GTAGAAATATGGTGAGACAGTCTTAACATATAGCATATTATAATGATTAT
CTCTCTAGTCATAAGAAATTATCGGAAGTATATTGTTCTGCCACTTTCTA
ATACCCTATATATTACTGGTTATACGTAATACCCTAATGTTTATTCCTCC
CTTATATTCGCACTGTTTTATTATCCCTGATTTTGTACCACATAACAGAG
GTCCTTTTATCATGGCCTGGCTTAATTATACTTCCCTTCTTTTTTTTCTC
TACTTATTCTTTCCTACTACCTCCTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_j09.g1 MSMg01no369_j09.g1 CHROMAT_FILE:
MSMg01no369_j09.g1 PHD_FILE: MSMg01no369_j09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:21 2005
         (386 letters)



>mm_chr3_111445497_111446282
          Length = 786

 Score =  716 bits (370), Expect = 0.0
 Identities = 382/386 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttattgctagattagtagtattcaaaacatacatgttaaaggagaagatgttaaacataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 ttattgctagattagtagtattcaaaacatacatgttaaaggagaagatgttaaacataa 421

                                                                       
Query: 61  catttaggattgggataatgtttatgtcttgcatgtttttgcaaaaagatctctttattc 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 catttaggattgagataatgtttatgtcttgcatgtttttgcaaaaagatctctttattc 361

                                                                       
Query: 121 tatatctgatggctactctgcaaattactcttcagttagttccacaattcaaattatcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 tatatctgatggctactctgcaaattactcttcagttagttccacaattcaaattatcaa 301

                                                                       
Query: 181 cataattaaatttagcatttttattaaaagactaaatttaatcttttaatttttagtatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 300 cataattaaatttagcatttttattaaaagactaaatttaatcttttaatttttaatatt 241

                                                                       
Query: 241 ggcttacttacttaatatcctcataaaatgtcataaaactagcttgatatggtagctcaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 ggcttacttacttaatatcctcataaaatgtcataaaactagcttgatatggtagctcaa 181

                                                                       
Query: 301 atgtttttagtcccagcacttgtgatgcaggggcagatgttccggcagaggtaggtatat 360
           |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 180 atgtttttagtcccagcacttgtgatgcaggggcagatgttcaggcagagggaggtatat 121

                                     
Query: 361 ctttatgagttcaagttcagcttggt 386
           ||||||||||||||||||||||||||
Sbjct: 120 ctttatgagttcaagttcagcttggt 95


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 786
Length adjustment: 9
Effective length of query: 377
Effective length of database: 777
Effective search space:   292929
Effective search space used:   292929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)