TAGTCCTCATGTCACTXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACATGTCTCAAAAAGACTCTATGAAGACAGAGAAGGAAGTCTGCAACT
GAGTTAGGCAGAGTTTAGGATATGCCCATCACTTTGGCTAAAGAAGAAGG
CTGTCAATAACCTTACTTGTTTTGCATGGGGTAGGCTCTTACAGTATAGT
ACAAGAAGGCTGGCTTTGAACTTGCAACCCTCTTGCCTTAGCCTCCCCAT
TTGCTGGATGCCATATGTCTTTGAAGCAGTGATTGTGACAACATGGTTTC
TGATATGTCCGAGTGATGTGGGGGACTGTTGGCAGAATTCGAAATGTTAA
GCTTGTGTCTCAGGTGAGGAGATTGGCACATCTGAAGGGTGCTACTCTAA
GGATGGTGAAACCCATTGATGGAAGCTTCCTGATTTGGGGATAGCTCGAG
AGTCTGCTCTGAGGGAGGAACTCAGGAAAGCCTTTCCTCAGCTGGATGGC
TGCAGAGTGACCACTTGCATCTGTTGTCCCATTTCTATGTGGTGACTATG
CTGTTGTCTCCTAGGTATGTAGGAAACCTCCCAAGGATATTTGACTACTC
ACCGTTAGATCCCACGCAGGACTTCCACACACAGATGCAAGTGCCCTGTG
CTGTGTTTTAAGCTTATGGTGGGTGGCTCGTTTTTGGTCACTTGTTTACT
TTTATTCAATTCCTTTTTTTTTCT

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTCTGTAGACCAGGCTGGCCTTGAAC
TCAGAAATCCACCAGCCTCTGCCTCCTAAGTGCTGGGATTAAAGGCATGC
ACCACCACTGTCTGGCATAGCTCCAGTCTTAAGGCTGGTTTTGTTGTGAA
ACTGGCAAGTTTGACTGTGCTTATCCCATGCAGGCTGTAGGGAAGCTTGA
AAACACCCGCTCCAGGAGTGAGAGAGTACAGTCTGAGATGTGGGAAACTC
TCAGACATCCAGGAGCCGCTTCGAATGGCAGAAGAGCTAAGAATGGAGTG
GGGGTGGGGGTGGGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNTTTTTNNTNTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTT
NTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTNNNTTTTTTTT
TTTTTTTTTTTNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTNTT
TTTTTTTTTTTTTTNTTTTTNNTTTTTTTTTTTTTTNTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTNNNTT
TTTTTNTTTTTTTNNTTTTTTTTTTTTTTNNTTTTTTTTTTTTTTTN

Query= MSMg01no369_k13.b1 MSMg01no369_k13.b1 CHROMAT_FILE:
MSMg01no369_k13.b1 PHD_FILE: MSMg01no369_k13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:27 2005
         (562 letters)



>mm_chr3_32784308_32785269
          Length = 962

 Score =  978 bits (506), Expect = 0.0
 Identities = 546/562 (97%), Gaps = 6/562 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcacatgtctcaa---aaagactctatgaagacagagaaggaagtctgcaactga 60
           ||||||||||||   |||   |||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcacatg---caagaaaaagactctatgaagacagagaaggaagtctgcaactga 260

                                                                       
Query: 61  gttaggcagagtttaggatatgcccatcactttggctaaagaagaaggctgtcaataacc 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttagggagagtttaggatatgcccatcactttggctaaagaagaaggctgtcaataacc 320

                                                                       
Query: 121 ttacttgttttgcatggggtaggctcttacagtatagtacaagaaggctggctttgaact 180
           |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttacctgttttgcatggggcaggctcttacagtatagtacaagaaggctggctttgaact 380

                                                                       
Query: 181 tgcaaccctcttgccttagcctccccatttgctggatgccatatgtctttgaagcagtga 240
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcaaccttcttgccttagcctccccatttgctggatgccatatgtctttgaagcagtga 440

                                                                       
Query: 241 ttgtgacaacatggtttctgatatgtccgagtgatgtgggggactgttggcagaattcga 300
           ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct: 441 ttgtggcaacatggtttctgatatgtccgggtgatgtgggggactgttggcagaatgcga 500

                                                                       
Query: 301 aatgttaagcttgtgtctcaggtgaggagattggcacatctgaagggtgctactctaagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatgttaagcttgtgtctcaggtgaggagattggcacatctgaagggtgctactctaagg 560

                                                                       
Query: 361 atggtgaaacccattgatggaagcttcctgatttggggatagctcgagagtctgctctga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atggtgaaacccattgatggaagcttcctgatttggggatagctcgagagtctgctctga 620

                                                                       
Query: 421 gggaggaactcaggaaagcctttcctcagctggatggctgcagagtgaccacttgcatct 480
           |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 621 gggaggaactcaagaaagcctttcctcagctggatggctgtagagtgaccacttgcgtct 680

                                                                       
Query: 481 gttgtcccatttctatgtggtgactatgctgttgtctcctaggtatgtaggaaacctccc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gttgtcccatttctatgtggtgactatgctgttgtctcctaggtatgtaggaaacctccc 740

                                 
Query: 541 aaggatatttgactactcaccg 562
           ||||||||||||||||||||||
Sbjct: 741 aaggatatttgactactcaccg 762


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space:   525504
Effective search space used:   525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)