BAC Information

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BAC

Clone NameMSMg01-369P19
Chromosome3 (Build37)
Map Location 24,750,758 - 24,750,869
singlet/doubletsinglet
Overlap genenone
Upstream geneEG635702, EG665189
Downstream geneLOC100039592, Nlgn1, LOC621017
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369P19.T7 (MSMg01no369_p19.b1)MSMg01-369P19.TJ (MSMg01no369_p19.g1)
ACCAG476841AG476842
length749726
length of high quality
(start - end)
112 (190 - 301)115 (200 - 314)
definitionCHROMAT_FILE: MSMg01no369_p19.b1 PHD_FILE: MSMg01no369_p19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:53 2005CHROMAT_FILE: MSMg01no369_p19.g1 PHD_FILE: MSMg01no369_p19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCCTATATTCAGAGGCATCCGCGGAATTCAGGTATATTTCACCCCGCTA
GGCACTGGACAGAGTACATGGATCAAAGAGATCCATGTGTAAACAGCAGT
CAGTGTATCTGGAGCAGTGTATCTGTAAGACATTAGCTACTACATGAGCG
GGGGCACTCACTGCCACATGAGGCTAATCATTCTACTGTGAGTGGTAGGT
GTTGTTTAGAGTCATGGTTTTCATTCTCCTCTCACTACCATGACCATGAC
ATTACTGGGAAGTCACCTACCATCTCTGGGCCAATTTCCATATGTTCTTT
GCTTTAAGAATGGATTAGTAGAAGTTATAAGAGGAAATATGGGATTTTTA
TTGTAAGTACGGGAGGAAGAGTTTAATTTTAAATAAGTAATATTTTCAAA
ATGTGGCTAAGTCTGTTAATCAATAATACCTATTGAGCTCCCACTGGGTG
CAATGGATCCTATTTAATGAAAGTTGACCCAACAGAAGGAAGTGGAATTC
TGTCTTCCAGAGCTGCTGAGGCCAAGGAGATAGATAGCACATGAATAAGC
CATACCTATATATGTAATTCCCCATTCCCCCTGGCATATGCCCATGGATG
AAAAACTTCCTCCCAGATGTACATTTTCCCCCGGTTATCTACCGACGCTT
TCTACCCTGCATGATTTCCTAACCACAGAACTCCCGGTTCCCCCATAGTC
CCATCCTGTTCCAAGACCCTCCTCACCCCCTTCTCCCTCCCTCCAACCN
ACTGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTTCCCCCCGGAATTCAGTAGGTTGGACATGCAGAAGACATCC
TGAGCCACATCAAACCAGACCTGGGCATCTAAAGAGTTCTAAAATTTTTC
TTTCCCTGGATATGTTTGAGGAGTGGAATAGGCTCTGACTCCACAGTGAT
GTCTTTTTTTAAAATTTTTAATTAGGTATTTTCTTCATTTACATTTCCAA
TGGTATTCTAAAAGTCCCCCATACCCTCCCCCCACACTCCCCTACCCACC
CATTCCCACTTCTTGGTCCTGGCGTTTCCCTATACTGGGACATATAAAGT
TTGCAAGACCAATGGACCTCTCTTTCGCGGTGATGGCCGACTAGGCCATC
TTCTGATACATATGCAGCTAGAGGCACGAGCTCCGGGGTACTGGCTAGTT
CATATTGCTGTTCCACCTATAGGGCTGCAGACCCCTTTAGCTCCTTGGGT
ACTTTCTCTAGCTCCTCCATTGGGGGGCCTGGGATCCATCCAATAGCTGA
CTGTGAGCACCTACTTCCGTGTTTGCCACGCCCCTGGACAGTCTCACAAC
AGACAGCTATATCACGCTCCTTTTCCCCACAATCCTTGCCAGCGGTGTCC
CGGGGNCGCCCCACCTCCGACGCCCGACCGCGAGCGCCTACGCCTAGCCC
TCTTCCCAACACACTACGGCCCCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_p19.b1 MSMg01no369_p19.b1 CHROMAT_FILE:
MSMg01no369_p19.b1 PHD_FILE: MSMg01no369_p19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:53 2005
         (112 letters)



>mm_chr3_24750558_24751069
          Length = 512

 Score =  217 bits (112), Expect = 2e-61
 Identities = 112/112 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagtggtaggtgttgtttagagtcatggttttcattctcctctcactaccatgaccatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gagtggtaggtgttgtttagagtcatggttttcattctcctctcactaccatgaccatga 260

                                                               
Query: 61  cattactgggaagtcacctaccatctctgggccaatttccatatgttctttg 112
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cattactgggaagtcacctaccatctctgggccaatttccatatgttctttg 312


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 112
Length of database: 512
Length adjustment: 8
Effective length of query: 104
Effective length of database: 504
Effective search space:    52416
Effective search space used:    52416
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)