BAC Information

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BAC

Clone NameMSMg01-369P22
Chromosome3 (Build37)
Map Location 21,347,194 - 21,347,396
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665094
Downstream geneLOC100040325, 7530428D23Rik, LOC100039465, LOC100040353, Tbl1xr1, LOC545506
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369P22.T7 (MSMg01no369_p22.b1)MSMg01-369P22.TJ (MSMg01no369_p22.g1)
ACCAG476847AG476848
length760795
length of high quality
(start - end)
203 (194 - 396)---
definitionCHROMAT_FILE: MSMg01no369_p22.b1 PHD_FILE: MSMg01no369_p22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:53 2005CHROMAT_FILE: MSMg01no369_p22.g1 PHD_FILE: MSMg01no369_p22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATTTGCGCCCGCTATACGACTCCTATTTCGAGAGGATGCGCGGAATTCTC
TGAGTATCTCAGAGTGGAATCTTTGATAAGCCCAGCTCTGAGAGACCATT
CATAACAATTATGTTTCTGTATTCCTGCCAGGAGAGAGATCCGCAAATGT
TTTATCAGTTGGCTTCGTAAAAATATCGTCCACAGTGAAAGCCAGAACAA
GACTACTGACTTCTTGGAAGACTGACCCAGCCTGGTTCACTTCAGAGCAT
GTCTCATTCTTTACTGGAACTCCTGCTTGAAAAATGTGTTGCCACTCAGG
TACGGCTGACAGCTTTTCAGCATTTGTGAGAATAGCAAGTTACAGATGCT
CCAGGGTCTTTGAAGTGAATGGCTTTTATTGTTGTTAATACTCAAGATGT
GGTGCATCAAGGGTTGCTAGACTGAAGTTTTTTTCCACCCCTCACCTGCT
AACACCTCTTGTTCAAACCCATACTCACAATGGTCTGGTCGTTCCATTCT
TTGGTGGCACCCCAGCAATCTGAATGGTGAAAGGTGCATTACCAAGGATC
TGACCTGATGCCCACCATATACTAAAAAGCACCCCCCGAACAATATTGAT
CTGCCTATCCTCCCGCCCCCTCCAAGACACTCTTCTTAACAGCGGTAATT
TACTAATCCCCGCCAATAGAATGGGTAATTTCACTTTTCCGCCCCCCCCC
CCACACGACTTCTAAAACCCTTCCCTATAAACAAAATCCCCGCGCGCCTC
CCTCCCCCCG
CTATGAACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTCCCGCCACACCTCAGAATCAACAAATGGGACCTCACAAA
ATTGCAAAGCTTCTGTAAGGCAAAGAATGCTGTCAATAACATAAAAAAGC
ATCGAAGAGATTGGGAAAAGAGGTTTATCAATTCTAAATCCAATAGCAGG
CTAATATCCAATATATACAAAGAACTCAAGAAGTTAGACTCCCGGGAACC
AAAAAACCCTAATAAAAATGTGATACAGAGCTAAACAAGGAATTCTCAGC
AGAGTAATATGGAATGGTTGTATTATCATCTAAGAAAATATTCAACATTG
TTAGTCATCATTTAAATACCAATCAAAACTAGCGGGGGATTCCCCTTCAT
ACCAATAACAATGACTATGATCAAAAACTCAGGGGGCAGCACATGCTGGC
CAGCATGTGGACAAAGACGAACACTCCTCCATTGCTGGTGGGATTGCCAG
CTGGTACCACCACTCTGGAAATCACTTTGGCAGCTCTTCCCAAAATTGGA
CACTACACCACCCTGACAACCCACCTATACCCATCCCTGGCCCTATACCC
CCCAACCATGTCCCCAACATCGCAACAACCGCACACCCCCCCCCCCCTAT
CGCTCCTCTACCCACCCACCCCTTTCTATCACACATCTCTGGCCACCCAC
CTCCAACCCCCCCCTCCTCCCCCACGGCTACCCCCTACTCCATTTTTCCC
CCCCCCCCACCCCTTTCCTACCCACCCCCCCCCTCCCCTCATCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_p22.b1 MSMg01no369_p22.b1 CHROMAT_FILE:
MSMg01no369_p22.b1 PHD_FILE: MSMg01no369_p22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:53 2005
         (203 letters)



>mm_chr3_21346994_21347596
          Length = 603

 Score =  377 bits (195), Expect = e-109
 Identities = 201/203 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaacaagactactgacttcttggaagactgacccagcctggttcacttcagagcatgtc 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 agaacaagactactgacttcttggaagactgacccagcctgtttcacttcagagcatgtc 260

                                                                       
Query: 61  tcattctttactggaactcctgcttgaaaaatgtgttgccactcaggtacggctgacagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcattctttactggaactcctgcttgaaaaatgtgttgccactcaggtacggctgacagc 320

                                                                       
Query: 121 ttttcagcatttgtgagaatagcaagttacagatgctccagggtctttgaagtgaatggc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 ttttcagcatttgtgagaatagcaagttacagatgctccagggtctttgaagtgaatgcc 380

                                  
Query: 181 ttttattgttgttaatactcaag 203
           |||||||||||||||||||||||
Sbjct: 381 ttttattgttgttaatactcaag 403


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 203
Length of database: 603
Length adjustment: 8
Effective length of query: 195
Effective length of database: 595
Effective search space:   116025
Effective search space used:   116025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)