CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCCAATCTCAATTTCCCATCTTCCCATAGGAATATTGGGATTACA
GACACACACTACAAGTCTTGACATAGAATCCTGAGATCTGAACTCAGATC
TTCACACTTGTACAACAACTGCTTTACCCACTCCAGTATTATTATTATTT
TTTTAACTTTCACATGAATGCTCTGAAAGGGCTTTGAAATGTTAAGATGT
TAAATGTCAGTTGTGCAAGTCCAATTTGGTCAAATAATAATACCCAGAAA
CCAGCAAAAATGAGAATGGGCTACTTAGCCAAGTATGTTCTTTTGAGTTT
GAATCTCTTATTTTTTCTGAGTGGTACAGCTGCTGCAGCTGAGCCTGTTT
GTAGAAACTGAAATGATTTTCATTTTGGAGGAAAATAATCATTACTCTGA
CCCTAAAATGGATATTTTCGCAAAATTTTAAATATACTTAATCATAACAA
AAATAAATGTATTAATGCTATTATTATGTATTGTTTTATAAGAAATTTAG
CAGTCAGTTACAATAGAACTTACTTATTCTTTATTATTTTATTCACATTG
TTTCATTGCCAACTAAAATACAGCATAGTGAAACTGAACCAATTTTATCA
GCTAAAACCCCGAGTTAATACTGAAATACCGAGCATATATTGTGTGCGCC
GCGTGTTTGTGCGCTTCCCATTATCCCTCTCCTTTT

TTTTCCCCCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTACTGCCCCTGGTAT
TACACTATCACTTTGAGTAAAAGTTAGGTCACTGCCCTTCACAGGAAATC
TACATCACCNAGGNAAGAAAGAAGTTTCTGAACGTTAGAGAAACCGAAAT
AGATACTTTAAAATTATTGCTTGAGTTTACCCCCCTTTTACCGGAAATTT
TCCAATGGGTTTAAGGAAAAAAAAATGGGGTTTGGGGGTTTTTAAAAGAA
TTTTCTTTTTTTTTTCTTGAAAAGGGGGGGTTTTTTTCTATAAAAGGGGG
AAATCTCCCCCCCCCTTTTTTTTAAAAAACCCCCCTTTGCTTTTTTGGGG
GGGGGGGAAAAAAAAAAAACTTTTTTTTTGTGTGCTCTCTTAAAAAAGGG
GAGGAGTAAAAAAAAAAAAACCCTATTCTCTCCCCCTCCCCGCGGGGGGG
GGGGGGTGTTTTTTCTCCCTTTACAAAAAATATTTTTGGTGTGGCGTGGG
GCGCCCCCCTCCCCCCACAAGATGTGGTGTGGGCGTCCCTTTTTTTTTTT
TT

Query= MSMg01no370_a03.b1 MSMg01no370_a03.b1 CHROMAT_FILE:
MSMg01no370_a03.b1 PHD_FILE: MSMg01no370_a03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:54 2005
         (509 letters)



>mm_chr3_62862678_62863587
          Length = 910

 Score =  926 bits (479), Expect = 0.0
 Identities = 500/507 (98%), Gaps = 1/507 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctccaatctcaatttcccatcttcccataggaatattgggattacagacacaca 63
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 844 ggaattctccaatctcaatttctcatcttcccataggaatattgggattacagacacaca 785

                                                                       
Query: 64  ctacaagtcttgacatagaatcctgagatctgaactcagatcttcacacttgtacaacaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 ctacaagtcttgacatagaatcctgagatctgaactcagatcttcacacttgtacaacaa 725

                                                                       
Query: 124 ctgctttacccactccagtattattatta-tttttttaactttcacatgaatgctctgaa 182
            |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 724 ttgctttacccactccagtattattattattttttttaactttcacatgaatgctctgaa 665

                                                                       
Query: 183 agggctttgaaatgttaagatgttaaatgtcagttgtgcaagtccaatttggtcaaataa 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 agggctttgaaatgttaagatgttaaatgtcagttgtgcaagtccaatttggtcaaataa 605

                                                                       
Query: 243 taatacccagaaaccagcaaaaatgagaatgggctacttagccaagtatgttcttttgag 302
            ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 604 caatacccagaaaccagcaaaaatgagaatggactacttagccaagtatgttcttttgag 545

                                                                       
Query: 303 tttgaatctcttattttttctgagtggtacagctgctgcagctgagcctgtttgtagaaa 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 tttgaatctcttattttttctgagtggtacagctgctgcagctgagcctgtttgtagaaa 485

                                                                       
Query: 363 ctgaaatgattttcattttggaggaaaataatcattactctgaccctaaaatggatattt 422
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 cggaaatgattttcattttggaggaaaataatcattactctgaccctaaaatggatattt 425

                                                                       
Query: 423 tcgcaaaattttaaatatacttaatcataacaaaaataaatgtattaatgctattattat 482
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tctcaaaattttaaatatacttaatcataacaaaaataaatgtattaatgctattattat 365

                                      
Query: 483 gtattgttttataagaaatttagcagt 509
           |||||||||||||||||||||||||||
Sbjct: 364 gtattgttttataagaaatttagcagt 338


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 910
Length adjustment: 10
Effective length of query: 499
Effective length of database: 900
Effective search space:   449100
Effective search space used:   449100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)