Query= MSMg01no370_g02.b1 MSMg01no370_g02.b1 CHROMAT_FILE:
MSMg01no370_g02.b1 PHD_FILE: MSMg01no370_g02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:25 2005
(454 letters)
>mm_chr3_115337101_115337954
Length = 854
Score = 857 bits (443), Expect = 0.0
Identities = 449/451 (99%)
Strand = Plus / Plus
Query: 4 ggaattccaggtcatggcatgctgctgtccacaattagagtgaatggatcttcccacctc 63
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccaggtcatgggatgctgctgtccacaattagagtgaatggatcttcccacctc 263
Query: 64 aacacattccaaatattcccacagacacagaggtttgtctcctaggcgatctatcaagtt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aacacattccaaatattcccacagacacagaggtttgtctcctaggcgatctatcaagtt 323
Query: 124 aaccatcaatactagtaaagagatctccaaagttccagatgaggccctaagaagtactgc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aaccatcaatactagtaaagagatctccaaagttccagatgaggccctaagaagtactgc 383
Query: 184 ccctatagtgagtcatcacaacacagggtctgggtccatgtcatggtgacaggtggcttg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ccctatagtgagtcatcacaacacagggtctgggtccatgtcatggtgacaggtggcttg 443
Query: 244 aatcagtcaagacggatacgataggatgctcaaacttggcttctgtggttgcctaggagg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aatcagtcaagacggatacgataggatgctcaaacttggcttctgtggttgcctaggagg 503
Query: 304 gtaaagtatcagtcgctttgtaaaccgtgagacccatccctgactctttactttctgcaa 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gtaaagtatcagtcgctttgtaaaccgtgagacccatccctgactctttactttctgcaa 563
Query: 364 aggccattctgcagcctacagaggcaaaggctgaggaggctgagcttcctctgaagaggg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aggccattctgcagcctacagaggcaaaggctgaggaggctgagcttcctctgaagaggg 623
Query: 424 cccccgagtactagagaaacactgtgggaac 454
||||||||||| |||||||||||||||||||
Sbjct: 624 cccccgagtacaagagaaacactgtgggaac 654
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space: 374736
Effective search space used: 374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no370_g02.g1 MSMg01no370_g02.g1 CHROMAT_FILE:
MSMg01no370_g02.g1 PHD_FILE: MSMg01no370_g02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:25 2005
(398 letters)
>mm_chr3_115540232_115541031
Length = 800
Score = 692 bits (358), Expect = 0.0
Identities = 392/406 (96%), Gaps = 8/406 (1%)
Strand = Plus / Minus
Query: 1 ttccctaaagtgagtcatagaaaccacaactcctcatctcagtcctgccccaggccctgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 ttccctaaagtgagtcatagaaaccacaactcctcatctcagtcctgccccaggccctgg 677
Query: 61 acataggaatgctacaatcacacaccc--acacacc--cacccacacacacaca--caca 114
||||||||||||||||||||||||| | ||||||| |||||||||||||||| | |
Sbjct: 676 acataggaatgctacaatcacacacacatacacacccacacccacacacacacacccccc 617
Query: 115 cacacacacacacacaaagcaagaagaatctgaacaggactttcagaccctttttgtgca 174
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 616 cacacacacacacacaaagcaagaagaatctgaacaggactttcagaccctttttgtgaa 557
Query: 175 agcgcacttaaacacctgctgtgaaactttcttgagggcaggtatgcaaacaggcagtgt 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 agcgcacttaaacacctgctgtgaaactttcttgagggcaggtatgcaaacaggcagtgt 497
Query: 235 cccctgggtc--ttttttttttttttcattttagaagcctctcattgaccacttctagct 292
|||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 496 cccctgggtcttttttttttttttttctttttagaagcctctcattgaccacttctagct 437
Query: 293 aaactaatttgttatgctagttttctcagtaacctttcacccatgactcttattggtgac 352
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 436 aaactaatttgttatgctagttttctcagtaacctttcacccatgactcttatgggtgac 377
Query: 353 cagacatatcatctttctgtctttctaccttcttttgcagaggaag 398
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 cagacatatcatctttctgtctttctaccttcttttgcagaggaag 331
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 800
Length adjustment: 9
Effective length of query: 389
Effective length of database: 791
Effective search space: 307699
Effective search space used: 307699
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
