BAC Information

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BAC

Clone NameMSMg01-370G21
Chromosome3 (Build37)
Map Location 118,333,623 - 118,334,041
singlet/doubletsinglet
Overlap geneDpyd
Upstream gene4833424O15Rik, EG668759, Snx7, LOC100043260
Downstream geneLOC100043275
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-370G21.T7 (MSMg01no370_g21.b1)MSMg01-370G21.TJ (MSMg01no370_g21.g1)
ACCAG477180AG477181
length8031,148
length of high quality
(start - end)
423 (37 - 459)---
definitionCHROMAT_FILE: MSMg01no370_g21.b1 PHD_FILE: MSMg01no370_g21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:29 2005CHROMAT_FILE: MSMg01no370_g21.g1 PHD_FILE: MSMg01no370_g21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGCCGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTG
TTTAATTTACTTCGAACTATTTCACAGATTTTGAAATATTCACATGGTAA
TTACCCATAAATCTGGCAAGATTCTCCATTTTCCATAATGTAATTTATTT
TAAATGTATGCATTGAGATAGCTACATTTTCTGTGGCCATTGGCGTGTTA
ACCAATTCAATGAGGGATCAGATGGGAACCGCACAGCACAGTACTCAACA
CAAAACGAATTTCGGTAGGGAAAGCTTCCTTCCATCCTTCTGAGCGTAGC
CCTCAATGACCTGTGTGTAGGCTGACTAAGACTGGCAAGACGTAGTCTGT
TGTCTTAGAGAAGTGACTTTTCCATAATTATACCATCATTTACTTAGCAA
TTAGCTTTCTATTATTCTACGTCCTGGAATCTGAAGTTTGAAACTTACGT
ATTTTAGAATTTACCTTTCTAAAAACACTGTGTATTTGCATATTAACTGT
CATAAATTACTTTCTGTTGCTGTGATTGAAAGATAAAAGCAACCATCTAA
CCCAAAACCATCCAACCGGAAAAAAAACCTCCAGCCCAAAGCAATCTGGA
GAAAAAAAAAAAAAATTAACTTGATTATAATTTTCCGCCCCTGGGATTTC
TCAGGCTGTCTGGTNGGAACTTTATTATAAAACAAAAAAATCCCTTCCGC
TTGTTTTCCCATACTTCTTCCTTAAACTTTTCTCTTTTGCCGCAACATTT
TATCTTTCGGCATATTATTCCTACTTCATGCGCATCTTTTCATTATCAAT
TTG
AAAGAAGGGAATTGNTNNNNNNNNTNGTTTCCAGAAACAGGGGCGGGCNN
GNANNNNNNNNGTTTTTCCANAACAAAAGGCGATTGTTCTGTAAACGTCG
AAAGAAATAGAACATAATAGCACCGTGCACGGTCTGAACCATCGCGGAGT
ACGAAGCATATACAGTAACGGAAGAGTGACATCGTTGAAATGATGGGGGG
GGGAGGACGCCGTGTTTAAACGTTACGACGAAGAGGAGGAAGCGGATAAT
AGACGGAGATGAAGTAGATAGGAGGTATGCGCGTTGCTAAGGAGATGAGG
CGTTATTGTCTGTATCACTAATATCTCTATTACCTAAGTTACAAAGAGAA
TGCTTTAACACCGTGCTTAACATAATATCACCGAATTATTTGTTTTCTGT
TACGGGCGATACGAGTACGCAACAATAATTTTTAATTAAAACGAATACCG
ATAACAACGTAGATGAGGTGTAGATACAGGTGAGAATAAATAAGATATTT
GGAGTCATCCAACCAACAACACACGACTCACACATCGAATGGACGAGATA
TATGGCGATCTGGTGTATACACTATATATTCGCACCAGCGCTCTATTCCG
CAATAGTTATTCCGGCACGTCCGACAACTCGTATTATTCCGGGCTATGTG
GTCTATTACACGAAAGAAAGTATATATCTAATTATTGATAATCGTAGTGA
CTATACCATACATATGGCGTACACATCAAGTATAGCTTATATAGAAGTTA
GTATCCATCATTGCGCTCAGTCGCATACGCGCGGATAAATATAATACAGA
CAGCGGCGAGTCGTGAGACGAGTGGNCAGAGATGTATCATCGCATATATA
TGTAACGTATCTTTCACATGACGGCGGCGTCTGCTTAGTCAGACGGAATT
ACAGATATATACGCTATGAGACNTCACGCATGCATATAATATAGCGAGGT
GTATCGCGCGACGTGTGATCAACACTATCCAAATAGTCGTACCGCGACGA
AATTTGCAACATANTAAGTATCGCGGCTATTCAACAGCTTGATAGTAATC
TACTTCTTTACACTATGTCCACGGCACCGTAACATNCATAGCTTAATATC
ATGATAGGAAGCAATCCCGCCAGATATATATGACCGCGTTNATGTATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no370_g21.b1 MSMg01no370_g21.b1 CHROMAT_FILE:
MSMg01no370_g21.b1 PHD_FILE: MSMg01no370_g21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:29 2005
         (423 letters)



>mm_chr3_118333419_118334241
          Length = 823

 Score =  756 bits (391), Expect = 0.0
 Identities = 412/419 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattgtttaatttacttcgaactatttcacagattttgaaatattcacatggtaa 64
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 623 gaattcattgtttaatttacttcaaactatttcacagattttgaaatattcacatggtaa 564

                                                                       
Query: 65  ttacccataaatctggcaagattctccattttccataatgtaatttattttaaatgtatg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ttacccataaatctggcaagattctccattttccataatgtaatttattttaaatgtatg 504

                                                                       
Query: 125 cattgagatagctacattttctgtggccattggcgtgttaaccaattcaatgagggatca 184
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 503 cattgagatagctacattttctgtggccattggcatgttaaccaattcaatgagggatca 444

                                                                       
Query: 185 gatgggaaccgcacagcacagtactcaacacaaaacgaatttcggtagggaaagcttcct 244
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gatgggaaccgcacagcacattactcaacacaaaacgaatttcggtagggaaagcttcct 384

                                                                       
Query: 245 tccatccttctgagcgtagccctcaatgacctgtgtgtaggctgactaagactggcaaga 304
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tccattcttctgagcgtagccctcaatgacctgtgtgtaggctgactaagactggcaaga 324

                                                                       
Query: 305 cgtagtctgttgtcttagagaagtgacttttccataattataccatcatttacttagcaa 364
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 catagtctgttgtcttagagaagtgacttttccataattataccatcatttacttagcaa 264

                                                                      
Query: 365 ttagctttctattattctacgtcctggaatctgaagtttgaaacttacgtattttagaa 423
           |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ttagctatctattattctaagtcctggaatctgaagtttgaaacttacgtattttagaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 823
Length adjustment: 9
Effective length of query: 414
Effective length of database: 814
Effective search space:   336996
Effective search space used:   336996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)