BAC Information

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BAC

Clone NameMSMg01-370H14
Chromosome3 (Build37)
Map Location 118,155,385 - 118,310,708
singlet/doubletdoublet
Overlap geneDpyd
Upstream gene4833424O15Rik, EG668759, Snx7, LOC100043260
Downstream geneLOC100043275
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-370H14.T7 (MSMg01no370_h14.b1)MSMg01-370H14.TJ (MSMg01no370_h14.g1)
ACCAG477214AG477215
length777776
length of high quality
(start - end)		444 (38 - 481)389 (70 - 458)
definitionCHROMAT_FILE: MSMg01no370_h14.b1 PHD_FILE: MSMg01no370_h14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:33 2005CHROMAT_FILE: MSMg01no370_h14.g1 PHD_FILE: MSMg01no370_h14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,155,385 - 118,155,825)(118,310,320 - 118,310,708)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATT
GTGCACTAGCTAAACTTATTTAGATGCATTTAAAACCAAAACTGGATGGT
TTTGATAATTCTCAATTGTGAATTATATTTCTTTCTCTGGAAAACCAATG
TCTGCTCTATGAATCATAGCAATATTTACTTGCAATGAAAAATTTGATCT
ATGTTAATTACAAACTATTTGCCAAAATCTTACTTGGAACAGAGTTGACA
TAGAGATGACAGGGAATTTTTGTTGTTTTGTCTTTGTTTGTTGTCTCTTT
GATGCCACTTGTTTATTAGTATAAAAATTAGGATTACTTTTGTGCAAAAC
AGAGACAAAACAGAAACCCTATAATCTAGAAGATAGTGTTTGTTTTAAAG
AATTAACTTCTGCTTCCTTTGTTTGCTTTGCCACTTTTTTTTTTTTTTGG
ATAAGAGGAACATTCATATGAAACTTTCTTCGGTGCCTATTGCAATAGAA
AATTATACTAAATTTAAGTATTAAAATTCATGCTAATATAAAGCCGTTTC
TTTTCTTCTGCTATATACATAATATTTCCCTTTTTCGCCTAGAAAATTTT
GGCCTACATTTTTTTTTTAACAATTGCTTAATTTTTTAACTCCCTTTACT
CCTTTTATTTCCCTTTATTTATTTCTTCTACCTTTCCTTTGTCTTTCTTT
TCACCTCTTTCATTATCTGCCTCCATTTTCTTTCTCCACCTTTTCCCCAT
TTCTTTCCCTCTCTTCTTACCTTTTTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTATAAAACTCTCCATAATGCCAAGACAAGTG
AATAGACAAATTTTTACTACTAAGTAGGTGCTAACATTGCCCTTTCTCTT
TTGTACTACTCAGTTCCTTACATCTATCTAAAGTAATCATCTCCTAGGTG
GTAAATGATTTGTAGAATATCTATTACATAATGATACAAAGAGCTTCAAA
TGGTGTAAAATACACACATTGCCTATGATTAATTTTGTACTTAATAAATA
AGGATGGAATAGGAAAAAGATACATTTATGCAGCATTTGATATAAAGTGG
TAATAATGTCATCTACCTTAAGGTTTTAGAGTTTAAAACCTTTTTGCATG
CATTGTATAATTTAAATAACAAACATCTACTGCTACATCCTCATTTTGGA
TGAATAAACAAATTANAGCTGAATAAATACAATATTTACTTATGTAACGA
GGACTGAGACATTCTGATGTGATTCAGCCCTCTTGTAGGATTTTAATTTA
AATTTTTCCACATTTAAAGCCTTTCTTTGTCTACAAAAAAACTTTTTACC
CCCTTTCAAAATGCAATAATAAAGGCCCTCTTCCTAATTATTTCCAATTC
ATTTTGGTGCGGCCCTTGTTATTCTCGAGTGTTTCCCTTCGCTCCGTCTT
TGGTTGTTTATTACCATATCTACCCATTTCCGCGCTTCTCTCTTCCCCAT
CCTTTTCTAGTTTCTGTTCCCCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no370_h14.b1 MSMg01no370_h14.b1 CHROMAT_FILE:
MSMg01no370_h14.b1 PHD_FILE: MSMg01no370_h14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:33 2005
         (444 letters)



>mm_chr3_118155182_118156025
          Length = 844

 Score =  822 bits (425), Expect = 0.0
 Identities = 437/441 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcattgtgcactagctaaacttatttagatgcatttaaaaccaaaactggatggt 63
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 204 ggaattcattgtgcactagctaaacttatttagatgcatttaaaaccataactggatggt 263

                                                                       
Query: 64  tttgataattctcaattgtgaattatatttctttctctggaaaaccaatgtctgctctat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tttgataattctcaattgtgaattatatttctttctctggaaaaccaatgtctgctctat 323

                                                                       
Query: 124 gaatcatagcaatatttacttgcaatgaaaaatttgatctatgttaattacaaactattt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gaatcatagcaatatttacttgcaatgaaaaatttgatctatgttaattacaaactattt 383

                                                                       
Query: 184 gccaaaatcttacttggaacagagttgacatagagatgacagggaatttttgttgttttg 243
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gccaaaatcatacttggaacagagttgacatagagatgacagggaatttttgttgttttg 443

                                                                       
Query: 244 tctttgtttgttgtctctttgatgccacttgtttattagtataaaaattaggattacttt 303
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tctttgtttgttgtctctttggtgccacttgtttattagtataaaaattaggattacttt 503

                                                                       
Query: 304 tgtgcaaaacagagacaaaacagaaaccctataatctagaagatagtgtttgttttaaag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgtgcaaaacagagacaaaacagaaaccctataatctagaagatagtgtttgttttaaag 563

                                                                       
Query: 364 aattaacttctgcttcctttgtttgctttgccacttttttttttttttggataagaggaa 423
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 564 aattaacttctgcttcctttgtttgctttgccacttttttttttttttagataagaggaa 623

                                
Query: 424 cattcatatgaaactttcttc 444
           |||||||||||||||||||||
Sbjct: 624 cattcatatgaaactttcttc 644


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space:   361956
Effective search space used:   361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no370_h14.g1 MSMg01no370_h14.g1 CHROMAT_FILE:
MSMg01no370_h14.g1 PHD_FILE: MSMg01no370_h14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:33 2005
         (389 letters)



>mm_chr3_118310120_118310908
          Length = 789

 Score =  752 bits (389), Expect = 0.0
 Identities = 389/389 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tataaaactctccataatgccaagacaagtgaatagacaaatttttactactaagtaggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 tataaaactctccataatgccaagacaagtgaatagacaaatttttactactaagtaggt 530

                                                                       
Query: 61  gctaacattgccctttctcttttgtactactcagttccttacatctatctaaagtaatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 gctaacattgccctttctcttttgtactactcagttccttacatctatctaaagtaatca 470

                                                                       
Query: 121 tctcctaggtggtaaatgatttgtagaatatctattacataatgatacaaagagcttcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 tctcctaggtggtaaatgatttgtagaatatctattacataatgatacaaagagcttcaa 410

                                                                       
Query: 181 atggtgtaaaatacacacattgcctatgattaattttgtacttaataaataaggatggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 atggtgtaaaatacacacattgcctatgattaattttgtacttaataaataaggatggaa 350

                                                                       
Query: 241 taggaaaaagatacatttatgcagcatttgatataaagtggtaataatgtcatctacctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 taggaaaaagatacatttatgcagcatttgatataaagtggtaataatgtcatctacctt 290

                                                                       
Query: 301 aaggttttagagtttaaaacctttttgcatgcattgtataatttaaataacaaacatcta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 aaggttttagagtttaaaacctttttgcatgcattgtataatttaaataacaaacatcta 230

                                        
Query: 361 ctgctacatcctcattttggatgaataaa 389
           |||||||||||||||||||||||||||||
Sbjct: 229 ctgctacatcctcattttggatgaataaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 789
Length adjustment: 9
Effective length of query: 380
Effective length of database: 780
Effective search space:   296400
Effective search space used:   296400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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