BAC Information

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BAC

Clone NameMSMg01-370J22
Chromosome3 (Build37)
Map Location 144,145,167 - 144,327,684
singlet/doubletdoublet
Overlap geneHs2st1, Sep15, LOC435761
Upstream geneEG668889, EG621809, LOC100039938, LOC100039952, Lmo4, LOC545572
Downstream geneSh3glb1, LOC668890, Clca1, Clca2, Clca4, EG622139, AI747448, Clca6, Clca3, Clca5, Odf2l, Col24a1, 2410019A14Rik, Cyr61
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-370J22.T7 (MSMg01no370_j22.b1)MSMg01-370J22.TJ (MSMg01no370_j22.g1)
ACCAG477324AG477325
length830819
length of high quality
(start - end)		357 (37 - 393)339 (66 - 404)
definitionCHROMAT_FILE: MSMg01no370_j22.b1 PHD_FILE: MSMg01no370_j22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:44 2005CHROMAT_FILE: MSMg01no370_j22.g1 PHD_FILE: MSMg01no370_j22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,145,167 - 144,145,519)(144,327,346 - 144,327,684)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGTC
TACTCACTTGGAGAGGGCGCTCAGCACGCTGCTGAGATTTAAACTGCGCT
GATCCTGTTAGCTAAGACAGATGGAGCAGGATGCCAGGCCTTGACTCTAT
TCCCCATGAGCAAATGGAAGGATGGAAGGGAGAGGAGACAGACATGCTCG
TACGGCCAAGCCTTTCAAGGAGTAGTAAGAATTCTGGGGCCACATTTTTG
ATAAAGAAGTCAATGCTTGCTAAACAGAAATCTGACTTCATATGAAGGAG
GCCCAGGGTCTCTTTTGTGTGTTCAGAAGGATTTTATGTTTATTAATAGG
AATATTTGTCCCTCAGGGGTCATGTATGTGAACACTTAGTCCCACTTAGT
GAACCTGCTTGGGAAGGTGTGTGACTGAGGGCTCACAGCCTGCGTTGAGG
TCCCTGTCTGCTCTTCTGTATCCGGCACTCTGCCTACTTTTGTGGTTTCT
TCTTTCTCCCCTTTTTTCTGGACCTCTTCTTCCCTCCCTTTCAAGGCCCC
TAACACAAATGGGATAAAAATAAAAGGACGGGTGGTGGGTGTTACACCTA
ACCTTTCTCCTCTTTTTTTCCCCGCTCTCCCCCCTTCTGCTCTTCTTCCC
CTATTCATCTAATTTTTTCCTCGCTTTTCTAAACTTTCTCCACCTCCTCC
TTTTCCCTTTTTTTTCTCCCTACAATTTTCCCCTTCCTTTCCTTTCTTTT
TATTTACCCTCCGTTCATCTTTCTCCCTTCTTACTGTTCTCTGTTCTTAT
CCTCCTTTTACCTCCTCCATTCTTCCCTTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAGAGGGAAAAACAGACGGTTTCTCCCGCAGCAAAG
TGACTGTTTTATATGGCAGGACATCGGACAGGCTTTCTCAGGGTCAGACC
ATGGTGGATAACTAATCGTAGTCATTAACAAGGTAAGAAGGTGCCAGAAC
TGTGGGGTCCTAATAGGCCATTAGTGCCTGAGAGGAGCACACACTTCTCG
GGACCATTAGCATCTCTGCAGCGGAGGCACTTCAGTGGATTCTTCTCAGA
GTGATGCCCTACGTCAGTTCTTGCTCAGGCTCTGTGTGTGACTGTCCGTG
GGCCACGCTCACATGTTGAACGCTACAAAAGTGAGCACAGGGGATTTTAA
GCCTGGGCGCGATGAACTTATATAAGTCACTCACCTTCTCTGCAGCCTGG
TGTCCTTTCTTCCCTTACACCTGTTTGATGGATTGAAATTTGCATGGATG
AATTTAACCGTGTTTCCTCCTCCCCTTGTTATTCTTTTCTAGTTTTTTTT
TCTCTCCCTTCTTTGTAAATCTCTCTCTTCTTTTCCTCTTTCTTTTTTTT
CCGCCCCCTTTTTCGTACCTTTTTTTCTTTCCTCCCCCTTCTTCCTATTC
TTCCCCTTTTCTCCTTTTTTTTCTTCTTCCCTCATCTTCTCCTTCCTTGT
TTGTTTTTCCCATTTTTCCCCTCTCCCTTTCTCCTTTCCATTTTTTTACC
CTTCTCTTCCCCTTTTCTCTTCTCTTTTTCTTTTTCCCTTTTTTTTTTTA
TTCACTTCTTCTCCTTGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no370_j22.b1 MSMg01no370_j22.b1 CHROMAT_FILE:
MSMg01no370_j22.b1 PHD_FILE: MSMg01no370_j22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:44 2005
         (357 letters)



>mm_chr3_144144963_144145719
          Length = 757

 Score =  652 bits (337), Expect = 0.0
 Identities = 349/353 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgtctactcacttggagagggcgctcagcacgctgctgagatttaaactgcgct 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 205 gaattctgtctactcacttggagagggcgctcagcacgctgctgagatttaaactgtgtt 264

                                                                       
Query: 65  gatcctgttagctaagacagatggagcaggatgccaggccttgactctattccccatgag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gatcctgttagctaagacagatggagcaggatgccaggccttgactctattccccatgag 324

                                                                       
Query: 125 caaatggaaggatggaagggagaggagacagacatgctcgtacggccaagcctttcaagg 184
           ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 325 caaatggaaggatggaagggagaggagacagacatgctcatatggccaagcctttcaagg 384

                                                                       
Query: 185 agtagtaagaattctggggccacatttttgataaagaagtcaatgcttgctaaacagaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agtagtaagaattctggggccacatttttgataaagaagtcaatgcttgctaaacagaaa 444

                                                                       
Query: 245 tctgacttcatatgaaggaggcccagggtctcttttgtgtgttcagaaggattttatgtt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tctgacttcatatgaaggaggcccagggtctcttttgtgtgttcagaaggattttatgtt 504

                                                                
Query: 305 tattaataggaatatttgtccctcaggggtcatgtatgtgaacacttagtccc 357
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tattaataggaatatttgtccctcaggggtcatgtatgtgaacacttagtccc 557


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 757
Length adjustment: 9
Effective length of query: 348
Effective length of database: 748
Effective search space:   260304
Effective search space used:   260304
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no370_j22.g1 MSMg01no370_j22.g1 CHROMAT_FILE:
MSMg01no370_j22.g1 PHD_FILE: MSMg01no370_j22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:44 2005
         (339 letters)



>mm_chr3_144327146_144327884
          Length = 739

 Score =  656 bits (339), Expect = 0.0
 Identities = 339/339 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agagggaaaaacagacggtttctcccgcagcaaagtgactgttttatatggcaggacatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 agagggaaaaacagacggtttctcccgcagcaaagtgactgttttatatggcaggacatc 480

                                                                       
Query: 61  ggacaggctttctcagggtcagaccatggtggataactaatcgtagtcattaacaaggta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 ggacaggctttctcagggtcagaccatggtggataactaatcgtagtcattaacaaggta 420

                                                                       
Query: 121 agaaggtgccagaactgtggggtcctaataggccattagtgcctgagaggagcacacact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 agaaggtgccagaactgtggggtcctaataggccattagtgcctgagaggagcacacact 360

                                                                       
Query: 181 tctcgggaccattagcatctctgcagcggaggcacttcagtggattcttctcagagtgat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 tctcgggaccattagcatctctgcagcggaggcacttcagtggattcttctcagagtgat 300

                                                                       
Query: 241 gccctacgtcagttcttgctcaggctctgtgtgtgactgtccgtgggccacgctcacatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 gccctacgtcagttcttgctcaggctctgtgtgtgactgtccgtgggccacgctcacatg 240

                                                  
Query: 301 ttgaacgctacaaaagtgagcacaggggattttaagcct 339
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 239 ttgaacgctacaaaagtgagcacaggggattttaagcct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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