BAC Information

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BAC

Clone NameMSMg01-370K02
Chromosome3 (Build37)
Map Location 93,187,616 - 93,187,987
singlet/doubletsinglet
Overlap genenone
Upstream geneSprr2h, Sprr2i, Sprr2j, LOC100043022, Sprr2k, Sprr1b, Sprr3, LOC100042575, Sprr1a, Sprr4, LOC100042581, Ivl, Smcp, Lce1a1, Lce1b, LOC620325, Lce1a2, Lce1c, Lce1d, LOC100043062, Lce1e, Lce1f, LOC668264, Lce1g, Lce1h, Lce1i, LOC545547, LOC631101, Kprp, Lce1l, 2310050C09Rik, Lce3a, Lce3b, Lce3c, LOC630994, 2310001H18Rik, Lce3f, Crct1, Lce1m, EG229571, Crnn, EG229574, EG668300, LOC668304, Flg, LOC100042701, Hrnr
Downstream geneRptn, EG383891, Tchh, Tchhl1, S100a11, S100a10, EG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563, Tdpoz4, Tdpoz3, EG668341, LOC668344, EG668346, Tdpoz5, EG668353, EG668356, LOC668359, LOC100042761, LOC433624, LOC668367, LOC433625, LOC100043188, EG383977, EG245290, EG668385, EG212727, Them4, Them5, Gm659, Rorc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-370K02.T7 (MSMg01no370_k02.b1)MSMg01-370K02.TJ (MSMg01no370_k02.g1)
ACCAG477332AG477333
length815778
length of high quality
(start - end)		55 (44 - 98)372 (72 - 443)
definitionCHROMAT_FILE: MSMg01no370_k02.b1 PHD_FILE: MSMg01no370_k02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:45 2005CHROMAT_FILE: MSMg01no370_k02.g1 PHD_FILE: MSMg01no370_k02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCTACTTTCAAATTCTTGGGTTTATTTTGTTGTTGTTGTTGTTGTTG
CTGCTGATGTCGTTTATTTTTCTTCGTCCCTTCGTTACTGCCACACATCA
TACAACATCCCCCATACTTTGTTCCCTCAATCCTCCGATAGTCCCATTTA
ACTTATTCACAATCCATGTAAACGCCGTGCCCTTACATCTCGATGTACTG
TAGTAAGAAGCACGCGAGCGCTGTTCGCGCAAGCCCTAGATATGTGCGGC
CGCCACCATTTTAAAGCCGTAATCACCAATACCCTCTTTAACCAACTTCG
CTTTGCAACAACACACGCCCACAATTGTGTTATATCTTTACTGCCAACGG
TCAGTCTAGAATATAGCTTCAGCACCATACAGAGCAAATCAACCTTCCAA
CAGCCCCATTAAATAACCATAATAGCTCCACCACTGAAGCCACGTCGTAT
CTCACCCATCTTATATCCCAACCCTTGTCCCGCTTTTAATACGTCCCTTC
CCCCTATACGTCCTTTTCGAGGCATAATCGCGCTATTCTCCTACGCTCTG
TTCATACACGTTTTTACTTTCCTCCCACGTCTTATTCGCATCCCTTTACT
ACTGTTCCTAAAGTAATCTACCTGATCTCCATTTACCCATAAGATAGCCC
GGAACGCAACGATAATAACTCTATTATGTTCATCCCTTCTTCCTAAAATT
CTCACACCGACCATTATCTTCCTCAAATTTGTGACCGTTCTACTCACAAA
CACACATTGCTATAT

GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCATTTATGATTCATTCTGTTTGTAATTT
ATTGACTCCTGTGACATATGAAAAACATAGAACCTTACAAAATGGGGACA
GGAAGATGTCCCTTTGGGGTTGGAAGCAGGTCCATTGCCAGGCCACAATG
ATGTCAAGAAGTCTGGAGAGTGGTTGCTGGTATAGTAAAGAGCTTACGCA
CAGAAGGAACAGAAAGAACTGTGTTCCTTAGAAATAGCTATATGTCCAAT
CTCCCAGGCCTAACTGGGAGGCCATTCCCCAGGTATATTATGTGTCTCAC
AGCAGGTGGCTGGCCTCATCTGTGATGCTAGCCAACATGTGTAAGACACA
CATGGAGCAGGCTAGTTAGAGGACTGAAGGCAGTGAGTGCTAGGTGAGAT
CTAACCTCATACACCAGCGAGTGGTTTTGTAACTTTCCTATTGACGTGAC
CTCTGATTCAGTCCCTTTTCTTTTGCCGATTTTTTTTCTTTTCCCTCCCT
CTCCCCATTTTTTTTTTTTCATTTACCTCTATTCTCTTTCTTCCCTTTTT
CCCCCCTTTCCCTTTTTCGCTCCTTTCTCCACTCACTACTTTTCCTTCTC
CCCTTTCCTTTTTCCCCTTTTCCTTCTCTCTTTCTTTCCTTTCCCTCCTC
TCTATCTCCGTATACCCTCTCTTCTTCTCCCCTTTCCTTTCTTCTCGCTT
CCGCTCTCTTTTTTTTCCCTCTCTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no370_k02.g1 MSMg01no370_k02.g1 CHROMAT_FILE:
MSMg01no370_k02.g1 PHD_FILE: MSMg01no370_k02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:45 2005
         (372 letters)



>mm_chr3_93187416_93188187
          Length = 772

 Score =  681 bits (352), Expect = 0.0
 Identities = 367/372 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcatttatgattcattctgtttgtaatttattgactcctgtgacatatgaaaaacataga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 tcatttatgattcattctgtttgtaatttattgactcctgtgacatatgaaaaacataga 513

                                                                       
Query: 61  accttacaaaatggggacaggaagatgtccctttggggttggaagcaggtccattgccag 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 512 accttacaaaatggggacaggaagatgtccctttgggattggaagcaggtccattgccag 453

                                                                       
Query: 121 gccacaatgatgtcaagaagtctggagagtggttgctggtatagtaaagagcttacgcac 180
           ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 452 gccacaatgatatcaagaagtctggagagtggttgctggtatagtgaagagcttacgcac 393

                                                                       
Query: 181 agaaggaacagaaagaactgtgttccttagaaatagctatatgtccaatctcccaggcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 agaaggaacagaaagaactgtgttccttagaaatagctatatgtccaatctcccaggcct 333

                                                                       
Query: 241 aactgggaggccattccccaggtatattatgtgtctcacagcaggtggctggcctcatct 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 aactgcgaggccattccccaggtatattatgtgtctcacagcaggtggctggcctcatct 273

                                                                       
Query: 301 gtgatgctagccaacatgtgtaagacacacatggagcaggctagttagaggactgaaggc 360
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 gtgatgctggccaacatgtgtaagacacacatggagcaggctagttagaggactgaaggc 213

                       
Query: 361 agtgagtgctag 372
           ||||||||||||
Sbjct: 212 agtgagtgctag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 772
Length adjustment: 9
Effective length of query: 363
Effective length of database: 763
Effective search space:   276969
Effective search space used:   276969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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