BAC Information

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BAC

Clone NameMSMg01-370P06
Chromosome3 (Build37)
Map Location 88,657,558 - 88,657,875
singlet/doubletsinglet
Overlap gene5830417I10Rik
Upstream geneSh2d2a, Prcc, Hdgf, Mrpl24, BC023814, Isg20l2, Crabp2, LOC100042242, Nes, Bcan, Hapln2, Gpatc4, Apoa1bp, Ttc24, Iqgap3, Mef2d, AI849053, LOC100042271, LOC100042277, Rhbg, 1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2, Arhgef2, Rxfp4, 2810403A07Rik, Rit1, Syt11
Downstream geneMsto1, Dap3, Ash1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3, LOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-370P06.T7 (MSMg01no370_p06.b1)MSMg01-370P06.TJ (MSMg01no370_p06.g1)
ACCAG477577AG477578
length1,043771
length of high quality
(start - end)		---318 (75 - 392)
definitionCHROMAT_FILE: MSMg01no370_p06.b1 PHD_FILE: MSMg01no370_p06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:10 2005CHROMAT_FILE: MSMg01no370_p06.g1 PHD_FILE: MSMg01no370_p06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAGAGGATGCCGCG
GAATTCAAATTCTCTAGCAACCACATCGATNNGTGTGTGTGTGTCGTGTG
TAGTGTCGTGCTGTGTGTGTCACCAATTTTTCCCCACTCATTCACAACCA
CATCTCACACCTATTCCCTTTATCTCCCCATTCCTCATCACATTTTAACC
CATAACCTATCCACATATCACTTTCCCCCTTCTCACCTTCAAAATTACCC
TTAACCCTTACATATACTACTCCCTTTTTCATCCATCACCTTATTATTTA
TATTTTCTCATCCTCCTTTCTCCTTATCTTCTATATCCAACCACTCTCTC
TTAATCACTCCTCCTTATCACCCTTTTATTATCCCTACCTTTTTTTATAT
CATAAATATCCTTCAACATACTATATCGCACCAAACTTAATATCTTACCC
AATACACTTCTTATAAAACAACCCCACTTACACCTTTCTCCTCACACTTA
TAATACTAACTTTTTACTTACCCCCCCACCCACTTTCCTCTACTTATACC
AGACCTACTCCCCCCTATACACATCATACACAACCTTCCCACTTCTTACC
ACACCCTCTCCTTAACATTTACCCACCCAATATTATAACCCTATAATACA
CAACTACCAATACTTCATATAACCTCTCCAATAACGTTCTTAATCCATCC
ATTATACCCTTACTCTATTCAACGATAAATTCATATTCACCCTCTAACTC
ACCCTCATATTTTATATTCCACAACCCATTTATCCCCCTTACCTTCCCAT
ATTTCCCCCCTTATCCCACCAACATTCTTATTATCCCACCTATTCTTTAA
ACATTTAATACACCACATATTATTCCTATCCCATATTTATTTACACATTA
TCTTTTAATTCCTCTCTTCACTAACACCCATATACTTCAATCACTACCAC
CCTCTCATACATTCTATCCTCTACATCATCACTTATTACTCATGTATCTC
TAATCCAACATATCACATCCTACACCAACTCAACACATATCTN

ATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAAACCTCTGGAAGAGCAATCAGTGC
TCTTACCACTGAGCCATCTCTCCAGCCCAAGCAAGGTTCTTTATGTAGCT
CATATTCTCTCTGTACTTTTGTGGCCTGGAATGTGTGATCCTCCTGCCTT
CTTGTCCCAAGGTGCTAGAGATTTGCCACTAAATCTGGCAGGGATACTTC
TTCTCTGTTTCAGTTTTTTAATCTGAACAATGGGAAAATTAATAGTCTCT
ATCAAATAGGTTGCCAGGATATGTTTTATGAGTGTCAGTTTTTTCTCTTC
TTCCTTCTCTCTCTTTTTTTTAAAAATGGTTTTAGAGCTTTGTTGTAGAA
AAGCAGGCGATACAGAACATGTTTATCGCCATATACATATAGATCCCTTC
CTGCCCCTCTTGACTTTTCTCTTTATTTTTTTTCTCTAATTTCTCCCCCC
ATCTTTTCTCCTTACACTATCAATTGTTTTCTCCACATTACATATCTCCT
TTTTTCTAATCCCTTTTTCCCCGTCTTTTCCCCCCCTTTTCCTTCCTTTT
CCGTCTTCTTATTCTCCCTCCCTCTTTTTTTTTCCCCTCCCCCTTTTTCC
CTCCCCTTTCTTTTCCCATTTTTTCCTTTTCCCTTCTCCTTTCCTTTTCT
TTCCCCTTTCTTCCCCATTTCGCTCTCTTTATTCTTCCCTTTTTATATTC
TCTTTTCTTTTTCCCTTTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no370_p06.g1 MSMg01no370_p06.g1 CHROMAT_FILE:
MSMg01no370_p06.g1 PHD_FILE: MSMg01no370_p06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:10 2005
         (318 letters)



>mm_chr3_88657358_88658075
          Length = 718

 Score =  600 bits (310), Expect = e-176
 Identities = 316/318 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaacctctggaagagcaatcagtgctcttaccactgagccatctctccagcccaagcaa 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaacctctggaagagcagtcagtgctcttaccactgagccatctctccagcccaagcaa 260

                                                                       
Query: 61  ggttctttatgtagctcatattctctctgtacttttgtggcctggaatgtgtgatcctcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggttctttatgtagctcatattctctctgtacttttgtggcctggaatgtgtgatcctcc 320

                                                                       
Query: 121 tgccttcttgtcccaaggtgctagagatttgccactaaatctggcagggatacttcttct 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 tgccttcttgtcccaaggtgctagagatttgccactagatctggcagggatacttcttct 380

                                                                       
Query: 181 ctgtttcagttttttaatctgaacaatgggaaaattaatagtctctatcaaataggttgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgtttcagttttttaatctgaacaatgggaaaattaatagtctctatcaaataggttgc 440

                                                                       
Query: 241 caggatatgttttatgagtgtcagttttttctcttcttccttctctctcttttttttaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caggatatgttttatgagtgtcagttttttctcttcttccttctctctcttttttttaaa 500

                             
Query: 301 aatggttttagagctttg 318
           ||||||||||||||||||
Sbjct: 501 aatggttttagagctttg 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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