NAAAAATCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCTCGGTTGGACAGACT
TCTTTCTTCAGAACATTGACATGAAATATGACGAAGGGACAGCGCCCTCT
CCCCAATATCCACTAAACTGCTTTGTTCTTTGCCCATATAATTAATAACT
GTCTGGCAATCAGTCATGCATTCTTCAACAGTACCTGAGGCACTAAGTGT
CCTTCTAACCCCTCCTGACAGAGGAAACCTCCATGATGGCTGTGCACAGA
CTTAACTCCACATAAGCCATTTACAAGTTAGGATGAAGGAAAGCATCCCT
GGGTTCGGATGCAGCCCAGAAGCCAGATGTCACTCTTTCCATGCAGCACT
ACAGAATTTTTGTTTTATTCAATTGGTGGCAGTGGCATTAGTTTGTTTCC
GTTTTATATAATTCAACCAACAAAAATAACAAAAACTTCTGTATCCAAGC
GGGTATCACTGAATATACACACTTGGATAGAGGTAAATCATTTTATAAAG
GGGAAAAAAATTTGATAGAAACTTATAGGAAAAGGGCCTGGAGTGTATGT
GAATGATGTGCCCCCAGCAATTTTCTCCCGGAATGGAATTCAGAAGCCCA
CCAATAATAAAAGGGGGAACAAAAGTGGGAAACACGGTTTTGGTGAATAA
AGGGAAAAAGTTCTATTTCCTTTTAACCACACCCCTCTCTTGGGAAAGAG
ATAAAAA

CCCCCCATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTAGGAAATCTTTAATTTCTTTATTTCTTCCCTGATCAT
GTTATCATTAAAGAGAGAGTTGTTCAGTGTCCATGAGTATGTGGGCTTTC
TGTTGTTTTTGTTGTTACTCAAGTCCAGCCTTAGTCCATGGTGATCTGAC
AGGATGCAGGTGATTAGTTCAATCTTCTATCTACTGAGTCTTGTTTTGTA
TTGGGTTATGTGGTCAAGTTTAGAGAAGGTTCTATGAGGTGCTTCAAAGA
AAGTACGTTCATTTGTTTGTGGGGTGAAATGTTCTGTACGTGTCTGTTAA
ATCCACTTGATTCATAACTTCTGTTGGTTTCACTGTGTCTTTGTTTCAAT
GACCTGTCCATTGGTGACAGTGGGGTGTTTAAGTCCTCCATGATTGATAT
GTGAGGTTCAGGGTGTTTTCAGATTTAGTAAAGTTTCTTTGACAAACGTG
GGTATCCTTGCATTTGGGACATAGATGCTCAGAATCTATCAAGACTTTAT
CTTTGGGGAATTTTTTTCCTTTGAAGAAAAAGAAATGCCTTCCCCCTTCC
TTTTGATTAATTTTTGGTGGAAAACCCGTTTCCTTGAAATTAAAAAAAAT
GGCCCCCCTTTTGTTTTTGGAACCATTTTCTTGGAGAAATTTTTTCCGCC
CCCTTTACCTCACGGATTATTCTTTCTTTTTTTTCCAAAAAGCTTTACTT
TTTTTTTCTATTCCA

Query= MSMg01no371_c24.b1 MSMg01no371_c24.b1 CHROMAT_FILE:
MSMg01no371_c24.b1 PHD_FILE: MSMg01no371_c24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:30 2005
         (448 letters)



>mm_chr3_80982875_80983722
          Length = 848

 Score =  793 bits (410), Expect = 0.0
 Identities = 441/456 (96%), Gaps = 8/456 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttcctcggttggacagacttctttcttcagaacattgacatgaaatatgacgaagggac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 tttcctcggttggacagacttctttcttcagaacattgacatgaaatatgacgaagggac 546

                                                                       
Query: 61  agcgccctctccccaatatccactaaactgctttgttctttgcccatataattaataact 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 545 agcgccctctccccaatatccactaaagtgctttgttctttgcccatataattaataact 486

                                                                       
Query: 121 gtctggcaatcagtcatgcattcttcaacagtacctgaggcactaagtgtccttctaacc 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 485 gtctggcaatcagtcatgcattcttcaacagtacctgaggcaccaagtgtccttctaacc 426

                                                                       
Query: 181 cctcctgacagaggaaacctccatgatggctgtgcacagacttaactccacataagccat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 cctcctgacagaggaaacctccatgatggctgtgcacagacttaactccacataagccat 366

                                                                       
Query: 241 ttacaagttaggatgaaggaaagcatccctgggttcggatgcagcccagaagccagatgt 300
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| 
Sbjct: 365 ttacaagttaggatgaaggaaagcatccctgggttcagatgcagcccagaagccagatgg 306

                                                                       
Query: 301 cactctttccatgcagcactacagaatttttgttttattcaattggtggcagtggcatta 360
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 305 cactctttccatgcagcactacagaatttttgttttattcaattggtggcggtggcatta 246

                                                                       
Query: 361 gtttgtttccgttttatataattcaaccaacaaaaataa--------caaaaacttctgt 412
           |||||||||| ||||||||||||||||||||||||| ||        |||||||||||||
Sbjct: 245 gtttgtttccattttatataattcaaccaacaaaaaaaaaaaaaaaacaaaaacttctgt 186

                                               
Query: 413 atccaagcgggtatcactgaatatacacacttggat 448
           ||||||||||||||||||||||||||||||||||||
Sbjct: 185 atccaagcgggtatcactgaatatacacacttggat 150


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 848
Length adjustment: 10
Effective length of query: 438
Effective length of database: 838
Effective search space:   367044
Effective search space used:   367044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)