BAC Information

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BAC

Clone NameMSMg01-371F17
Chromosome3 (Build37)
Map Location 47,154,700 - 47,155,126
singlet/doubletsinglet
Overlap genenone
Upstream geneEG241989, LOC545517, LOC383849, LOC383850
Downstream geneLOC100039426, LOC666202, LOC666208
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-371F17.T7 (MSMg01no371_f17.b1)MSMg01-371F17.TJ (MSMg01no371_f17.g1)
ACCAG477884AG477885
length762860
length of high quality
(start - end)		426 (76 - 501)---
definitionCHROMAT_FILE: MSMg01no371_f17.b1 PHD_FILE: MSMg01no371_f17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:45 2005CHROMAT_FILE: MSMg01no371_f17.g1 PHD_FILE: MSMg01no371_f17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCTGAACTCATGTATATTCTTAAAA
CAGTTCATCATCACTCTTTCCATTTGAAGAAGACGTACTGACAGGAAGTT
AATTTACTGTACTGAGTATGATTTGATAGGACCTGAACCTTTTGCTCATG
GGTTAGTTAATAATATACTTTCATTCATATTTCTTTCAACTACATGTTCA
TGTTCTATTGCATTAAAATGAATAATTAATTAAGTAAACTACTTGACTGC
ATGAATTACATGGAAAAAATCTATAATATCTGTTTATAGTCATAATCATC
CTGGCATTCATTTATGGTATAGGAGGAAAGTTCTTGAATAAATAGTGCAT
GAATTAATGATTGCATTTCAGTCTGCATAGGGCATACAGAANATATGCTT
TTGATTTTAAGATACTAATAAATAATGATTAAGAAACATAATAAACATTT
ATATTTTTTTAGAAATAACGTTTATTTGTTTCTATTTAGCATCATTTGTA
AATCTGCTACAAATGGCAAATCTTGGGCACAATTGACCTAGTTTTATTAA
AAACTTATTAAAACCCTTAATTTCTCCCGCATCCTAAAATCAGGGGTAAA
AGGTGGTTTTATCCCCTGATAACGGGGGTTCTCTGGGATGGACTAAACCA
CTTTTTTGTTCCCTGGGTGGAAAAACTTTATGGTTCTACAAAATCTGTAC
TTTTTTAGTTAT

ATTTGCCGCCGCTATACAACTCACTATATTTCCAGGATCCGCGGAATTCA
TGTANTCTCACATTAATAAATCTTTGGACATTGCAATTTCTAACCACTAT
AATATGGATACTCATATTTATATCTGCTTAGAAATAAATTTGGTATCCTT
TTTAACTTTCGCGCTCAGGTGTGAATTCGCTCAGACCAGCGAGTTGTCCT
GCGTTTTGCGGGGAGCTGGAACGTGCGATTTGCGGTGATGGGGGCTGAGG
GTGGCAGAAATGTGGGTGTGTTTGGGGAGAAATATTCTGTTGATTTGTTG
TTGTCCTGTGTGGGGGAAAAAATATAAAGGGTTTTTTCCTAAAAAAACCC
TTTTAAAACCCAATTTCTTTTAAACGGGAAAAACCCCTTTTTAAACAAAA
AAAATTATAAACTTTTGACCAACCCCAAAGGGGGTTTTTTTCCCCCCCCT
TCCCTCTCCCCCCCCCAAAAAAAAAGGCGAAAAAAATTCCCCCCCCTCTT
TAAAAAAAAAAATTTTTTTTTTTTTTTCCCCCCCCCTTTTTTTTAAAAAA
AAAACCCTCCCTTTTTTTTTTTTTCTCTCCCCCCCCCCCCCCCCTCCCCC
CNTTTTATTTTCTTCTCCTCAACAAAAAAAAAAAACTTTCTCTTTCCCCN
CTCTNGGNTGCCNNNNCCTCCCCCCTCTCCTCCCCCCTCCCTCCCATTAT
CTTTNATACCATCCCCCCCTCCTCCAAATATTTCTTCTTCAAAAAAAAAA
AANAATAACCCNTTCTCCTCCCTCTCTCCCTTCTCTTTTCTTTTTNCCCT
CNCCTCCNNCNATACTNCNNNTTTTCCTTTTCTCCTCCTCAATAAAATAA
TATTATATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no371_f17.b1 MSMg01no371_f17.b1 CHROMAT_FILE:
MSMg01no371_f17.b1 PHD_FILE: MSMg01no371_f17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:45 2005
         (426 letters)



>mm_chr3_47154500_47155326
          Length = 827

 Score =  719 bits (372), Expect = 0.0
 Identities = 413/427 (96%), Gaps = 1/427 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctgaactcatgtatattcttaaaacagttcatcatcactctttccatttgaagaagacg 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 627 cctgaactcatgtatattcttaaaccagttcatcatcactctttccatttgaagaagacg 568

                                                                       
Query: 61  tactgacaggaagttaatttactgtactgagtatgatttgataggacctgaaccttttgc 120
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 567 tactgacaggaagttaatttactgtactgagtatgatttgatagggcctgaaccttttgc 508

                                                                       
Query: 121 tcatgggttagttaataatatactttcattcatatttctttcaactacatgttcatgttc 180
           || ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 507 tcttgggttagttaataatatacttttattcatatatctttcaactacatgttcatgttc 448

                                                                       
Query: 181 tattgcattaaaatgaataattaattaagtaaactacttgactgcatgaattacatggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 447 tattgcattaaaatgaataattaattaagtaaactacttgactgcataaattacattgaa 388

                                                                       
Query: 241 aaaa-tctataatatctgtttatagtcataatcatcctggcattcatttatggtatagga 299
           |||| ||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 387 aaaaatctataatacctgtttatattcataatcatcctgggattcatttatggtatagga 328

                                                                       
Query: 300 ggaaagttcttgaataaatagtgcatgaattaatgattgcatttcagtctgcatagggca 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 327 ggaaagttcttgaataaatagtgcatgaattaatgattgcatttcagtctgcataaggca 268

                                                                       
Query: 360 tacagaanatatgcttttgattttaagatactaataaataatgattaagaaacataataa 419
            |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 aacagaaaatatgcttttgattttaagatactaataaataatgattaagaaacataataa 208

                  
Query: 420 acattta 426
           |||||||
Sbjct: 207 acattta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 827
Length adjustment: 9
Effective length of query: 417
Effective length of database: 818
Effective search space:   341106
Effective search space used:   341106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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