BAC Information

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BAC

Clone NameMSMg01-371H13
Chromosome3 (Build37)
Map Location 88,454,907 - 88,455,460
singlet/doubletsinglet
Overlap genenone
Upstream geneArhgef11, EG625281, 3110045G13Rik, Ntrk1, Insrr, Sh2d2a, Prcc, Hdgf, Mrpl24, BC023814, Isg20l2, Crabp2, LOC100042242, Nes, Bcan, Hapln2, Gpatc4, Apoa1bp, Ttc24, Iqgap3, Mef2d, AI849053, LOC100042271, LOC100042277, Rhbg, 1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2, Arhgef2
Downstream geneRxfp4, 2810403A07Rik, Rit1, Syt11, 5830417I10Rik, Msto1, Dap3, Ash1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-371H13.T7 (MSMg01no371_h13.b1)MSMg01-371H13.TJ (MSMg01no371_h13.g1)
ACCAG477971AG477972
length777758
length of high quality
(start - end)		421 (77 - 497)554 (67 - 620)
definitionCHROMAT_FILE: MSMg01no371_h13.b1 PHD_FILE: MSMg01no371_h13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:55 2005CHROMAT_FILE: MSMg01no371_h13.g1 PHD_FILE: MSMg01no371_h13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGAGAAAGAAAACAGAAATAAT
CACGTTGTCATAGAAACACTGTAAGCAGCCAGGCAGTGGTGGTGCACGCC
CTTGATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAATTCGAG
GTCAGCCTGGTCTATGGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAG
AAACCCTGTCTCAAAAAAAAAAAAAAAAAAGAAAGAAAGAAAGAAAGAAA
AGAAAAAAAGGAAATAAAGACTTAAGCAGGCTAGGTGGCCCATGCCTTTA
GCCCCAGCATTGGGAAGGCAGAAGAAGGTGACCTGAGATCCAGGATAGTC
TGGACTACAAAGATGGAGAGTGGGAGCAGGCAAGGGCACAGGGCGGACTT
ACAACCTGCCCATCAAGCTGTCCTTGGTCTCCACATTCTCTTGTGCACTC
GCACACACATACACACAAACACCCCAGAGTCTGGGATCCCTTTATCCCAA
CACTCAGGAGGGAAAGGCAGCTGTCAAGGACGAACTGGTCTACAAAGGGA
GCTTCCGGGCGCAAAGTTAAAAAGGAAGACCCCCCTTCCTTTAATTTTCA
AAAAAGGGGGGGTTTCCCGGCCCCCCCCTTCCTAAGGCCTCTTCGGGTTT
CCCCCCCTTCTCCCCGAGGGGGGGAGGGCCTCGACCCGGGGACATAAGTT
GGGAAGGGGGAGGGGGTTTCCCCCCCC

CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCAGGACAGTTACGGTTAGGTCGTAAGACCGTCTCAATAAAAACAAAA
ACAAGGAAATGAAAAAACCTTATGTTTGCTTCTGACACACGTACAAATGT
GAACACAAATGTACATGCAAGCATGCATACATACATACATAAGCACAGGA
AAGAAGGAAGAATAGGCTAAAATGATCTGAAAAGCTCAACTTGTTGGCAC
ATGCCTATAATTCGAGCATCTGGGATCAAGATTAAAGATTCCAAGCGACC
CTCAGCTTAACAGTGTGAGACCAGCCTGGGTATGATGAAACCCTGCCTCC
AATTTTAGAAGGGGAGAACTGACTTCTAGAATAATTTGCGTGGGGGGAAG
ATTCCAGCCCACATGCTCTGGCGCTTGGCTGAAGTGCAGTTGTACTCAGT
GAGACTAGCTTCTGGTTTCTGACCCTCAGCCTACAAAACTTTTCTGTATC
TCTTGACTCCCCACCCCCACGCCCAGACCCTTGTGATTGTTACCCAATCC
TTGATTGAAAGGGACAGATCTATTCACTATTCTCAAAGGCTATACACTCA
GGGGCTGCATCTTGTGGCAGCAAATCGACAGACAAACGCTGAAGGGGAGG
CCTCCACATCATTCCTAATGGGCACCTCTAAAAATGACCAAAGCTTATTT
GGCCCGAAAATACTTTTTTTGGCTTTGGCACCCAACAAGCCTTAACGTGT
TCCTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no371_h13.g1 MSMg01no371_h13.g1 CHROMAT_FILE:
MSMg01no371_h13.g1 PHD_FILE: MSMg01no371_h13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:55 2005
         (554 letters)



>mm_chr3_88454707_88455660
          Length = 954

 Score = 1025 bits (530), Expect = 0.0
 Identities = 548/554 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttaggtcgtaagaccgtctcaataaaaacaaaaacaaggaaatgaaaaaaccttatgtt 60
           ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 201 gttaggtcgtaagaccgtctcaataaaaacaaagacgaggaaatgaaaaaaccttatgtt 260

                                                                       
Query: 61  tgcttctgacacacgtacaaatgtgaacacaaatgtacatgcaagcatgcatacatacat 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcttctgacacacgtacaagtgtgaacacaaatgtacatgcaagcatgcatacatacat 320

                                                                       
Query: 121 acataagcacaggaaagaaggaagaataggctaaaatgatctgaaaagctcaacttgttg 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acataagtacaggaaagaaggaagaataggctaaaatgatctgaaaagctcaacttgttg 380

                                                                       
Query: 181 gcacatgcctataattcgagcatctgggatcaagattaaagattccaagcgaccctcagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcacatgcctataattcgagcatctgggatcaagattaaagattccaagcgaccctcagc 440

                                                                       
Query: 241 ttaacagtgtgagaccagcctgggtatgatgaaaccctgcctccaattttagaaggggag 300
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttacagtgtgagaccagcctgggtatgatgaaaccctgcctccaattttagaaggggag 500

                                                                       
Query: 301 aactgacttctagaataatttgcgtggggggaagattccagcccacatgctctggcgctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aactgacttctagaataatttgcgtggggggaagattccagcccacatgctctggcgctt 560

                                                                       
Query: 361 ggctgaagtgcagttgtactcagtgagactagcttctggtttctgaccctcagcctacaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggctgaagtgcagttgtactcagtgagactagcttctggtttctgaccctcagcctacaa 620

                                                                       
Query: 421 aacttttctgtatctcttgactccccacccccacgcccagacccttgtgattgttaccca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aacttttctgtatctcttgactccccacccccacgcccagacccttgtgattgttaccca 680

                                                                       
Query: 481 atccttgattgaaagggacagatctattcactattctcaaaggctatacactcaggggct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 681 atccttgattgaaagggacagatctattcactattctcaaaggctatacactcagggtct 740

                         
Query: 541 gcatcttgtggcag 554
           ||||||||||||||
Sbjct: 741 gcatcttgtggcag 754


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space:   513536
Effective search space used:   513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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