Query= MSMg01no371_i09.b1 MSMg01no371_i09.b1 CHROMAT_FILE:
MSMg01no371_i09.b1 PHD_FILE: MSMg01no371_i09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:00 2005
(463 letters)
>mm_chr3_115951233_115952095
Length = 863
Score = 847 bits (438), Expect = 0.0
Identities = 459/470 (97%), Gaps = 7/470 (1%)
Strand = Plus / Minus
Query: 1 tgcttggtacagggacatttgcaggtggtatttcaggtcaggtaaatttctctttgtctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tgcttggtacagggacatttgcaggtggtatttcaggtcaggtaaatttctctttgtctc 447
Query: 61 agaatcacagagaaaagatttccacactgggatattttccttttcagagggacccagcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 agaatcacagagaaaagatttccacactgggatattttccttttcagagggacccagcag 387
Query: 121 aggatgtcatgcagaagaggaagggcaaagatactttctttgaatcactgataaggaaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 aggatgtcatgcagaagaggaagggcaaagatactttctttgaatcactgataaggaaag 327
Query: 181 ttgttgaaaagatctacttgccaatagggagttggtcttgtttgaattctcagtggagga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ttgttgaaaagatctacttgccaatagggagttggtcttgtttgaattctcagtggagga 267
Query: 241 cagccttgtccctctgatgatgactgcactagctgacgtgtcccctttattgcagagtct 300
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 caaccttgtcccactgatgatgactgcactagctgacgtgtcccctttattgcagagtct 207
Query: 301 agaggtcccgatg-------ccccaccctcctctaaggcaatcttagtgactgacaagtt 353
|||||| | |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 agaggttcagatgatggttgccccaccctcctctaaggcaatcttagtgactgacaagtt 147
Query: 354 cacaacatgattctgcatcaaagaacatggaggagctggggcaatggctcagccagtaaa 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 cacaacatgattctgcatcaaagaacatggaggagctggggcaatggctcagccagtaaa 87
Query: 414 gtgcttgctgtagaggcctgaggacccgaggtcagatccttacaatgcat 463
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86 gtgcttgctgtagaggcctgaggacccgaggtcagatccttacaatgcat 37
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 863
Length adjustment: 10
Effective length of query: 453
Effective length of database: 853
Effective search space: 386409
Effective search space used: 386409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no371_i09.g1 MSMg01no371_i09.g1 CHROMAT_FILE:
MSMg01no371_i09.g1 PHD_FILE: MSMg01no371_i09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:00 2005
(548 letters)
>mm_chr3_115816969_115817916
Length = 948
Score = 1011 bits (523), Expect = 0.0
Identities = 543/551 (98%), Gaps = 3/551 (0%)
Strand = Plus / Plus
Query: 1 ttttaccagctccacctaactgtcgaaacttgttactctccttggaaacttggaataatt 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 198 ttttaccagctccacctaactgtagaaacttgttactctccttggaaacttggaataatt 257
Query: 61 ttaaaaataaatttaaaaaaaaa---gcaaacacagaaagctaaccttttacatcaagtg 117
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 258 ttaaaaataaattaaaaaaaaaaaaagcaaacacagaaagctaaccttttacatcaagtg 317
Query: 118 ttaaacttcttaattgtgagccaacttcagtcttagattcacactcgtatatgccggcat 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ttaaacttcttaattgtgagccaacttcagtcttagattcacactcgtatatgccggcat 377
Query: 178 cctgcagctgtgcctggcggatggtgtacgagccatccacagactttaataccatgtctc 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 cctgcagctgtgcctggcggatggtgtacgagccatccacagactttaataccatgtctc 437
Query: 238 ctgtctttgctttcttcttcaggattatccatgtttcaggcacatttccacaagtgcagg 297
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 438 ctgtctttgctttcttcttcaggattatccatgtttcgggcacatttccacaagtgcagg 497
Query: 298 agataatgacggtgtctccctctttgacactcttagatggaaagactgtaagctgtatat 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 agataatgacggtgtctccctctttgacactcttagatggaaagactgtaagctgtatat 557
Query: 358 ctcttggagagactgaagtgagaatgaacagttagagtgtgtgtggggaggggtacagca 417
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 558 cttttggagagactgaagtgagaatgaacagttagagtgtgtggggggaggggtacagca 617
Query: 418 atctcttcctgactgagaacattggcagtcattgctaagctgtttgcaatgctttctgca 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 atctcttcctgactgagaacattggcagtcattgctaagctgtttgcaatgctttctgca 677
Query: 478 tgagctgtaaggaaggcaagctaagaagctgggcgtttgaccaattcccagtaatcatat 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tgagctgtaaggaaggcaagctaagaagctgggcgtttgaccaattcccagtaatcatat 737
Query: 538 tgcaagcaaga 548
|||||||||||
Sbjct: 738 tgcaagcaaga 748
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space: 504644
Effective search space used: 504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
