BAC Information

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BAC

Clone NameMSMg01-371I18
Chromosome3 (Build37)
Map Location 108,754,350 - 108,754,746
singlet/doubletsinglet
Overlap gene4921515J06Rik
Upstream geneLOC668674, Gstm3, LOC624701, Gstm2, Gstm1, LOC100043641, Gstm4, Ampd2, Gnat2, Gnai3, Gpr61, LOC100043654, Amigo1, Cyb561d1, Atxn7l2, Sypl2, LOC668686, Psma5, Sort1, Mybphl, Psrc1, Celsr2, Sars, 5330417C22Rik, 1700013F07Rik, 2010200O16Rik, Taf13, Wdr47, LOC100043166, Clcc1, Gpsm2, 4921525H12Rik, Stxbp3a, Fndc7, Prpf38b
Downstream geneB430201A12Rik, 4930443G12Rik, Slc25a24, Vav3, Ntng1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-371I18.T7 (MSMg01no371_i18.b1)MSMg01-371I18.TJ (MSMg01no371_i18.g1)
ACCAG478027AG478028
length799771
length of high quality
(start - end)
394 (75 - 468)512 (46 - 557)
definitionCHROMAT_FILE: MSMg01no371_i18.b1 PHD_FILE: MSMg01no371_i18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:01 2005CHROMAT_FILE: MSMg01no371_i18.g1 PHD_FILE: MSMg01no371_i18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCACATGGCTCAGTGTGATTGTTTTCT
TAAACAATTTGAGAAATTGGGACTGGAGATGTAGCCCAGCTTGTAGAATG
CTGGCCTAGCATGCACAAAGCCCTGTGTTCCATGTCCAGTATCTTGGTGC
AATGGTTTAAGCCAATAAACCTAAGACTTTTAGAACTTAGGTTGTAGAGG
CAAAAGGATTAGAAATTCAAGGTCAGCTCTGGCTACATATCAAGTTTGAG
ATCAGATTAGACCATAGGAGACCCTGTCTCAATAAATCAATTAATACATA
AAAAAACATAAAGAAGGAATTAAGAAATTAAATTACTCTATAAGAAAGGA
ACAGAAGCAGAGTTTCAGCAAGCAGAGTTTTTTTTTTTTTTAGCAAGCTT
TGTTTCTGACGCATGATGCTAAAACTCCAACCTGTGCTGGGCATGGTGTC
ACAGACCTGTATTCTCAATACACTCAGGTATAGTCAGGACGATTGCTGTT
GAATTTGAAGTCAACCCGTTCCTGCATAGCGTCATCCATGTCTTTTAAGT
CTGTATACTCTTTTCTTCCATTCTCATTCCCACTCTATTCTACATCCCAC
AAACACCCTTTTTCTTTTTCTTAACGTTTTCCACTTAAAAATCCTTCCTT
CTTTCTTTCTATCTTGACTTTTTTCACTTCTCTCTTTCTTTCTCTGTCCT
CTCTTTTGCCTGTCTCGTTATCTTTTTTTCTTTATCTCCATGTTTACTA
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGGATCCGCGGA
ATTCTCACCTGAGTTTCACCGAATGGCAGAGAAGCACCTGAAAAAATGTT
CAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTAAGATTC
CACCTCACACCAGTCAGAATGTCTAAGATCAAAAATTCAGGTGACAGCAG
ATGCTGGCGAGGATGTGGAGAAAGAGGAACGCTCCTCCATTGTTGGTGGG
ATTGCAGGCTTGTACAACCACTCTGGAAATCCGTCTGGCGGTTCCTCAGA
AAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCAT
ATATCCAGAAGATGCCCCAACAGGTAAGAAGGACACATGCTCCACTATGT
TCATAGCAGCATTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGC
CCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGA
GTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAAT
GGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCCCCAAGG
AATCCCCCCATATGTACTCCCTGGATAAGGGGATATTAGCCCATAACCCA
AGAAACCCCAGATTAAAGATACAATTTCCCCAAACACCTGGAATCTCCTT
AAAATTGTAAATTGTCTGGGTGGAATCTTCTCCCCCCCTTAAAATGGCGA
CATATCCCTCCTTGTTATAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no371_i18.b1 MSMg01no371_i18.b1 CHROMAT_FILE:
MSMg01no371_i18.b1 PHD_FILE: MSMg01no371_i18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:01 2005
         (394 letters)



>mm_chr3_108754150_108754946
          Length = 797

 Score =  712 bits (368), Expect = 0.0
 Identities = 389/398 (97%), Gaps = 5/398 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacatggctcagtgtgattgttttcttaaacaatttgagaaattgggactggagatgtag 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacatggctcagtgttattgttttcttaaacaatttgagaaattgggactggagatgtag 260

                                                                       
Query: 61  cccagcttgtagaatgctggcctagcatgcacaaagccctgtgttccatgtccagtatct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccagcttgtagaatgctggcctagcatgcacaaagccctgtgttccatgtccagtatct 320

                                                                       
Query: 121 tggtgcaatggtttaagccaataaacctaagacttttagaacttaggttgtagaggcaaa 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggtgtaatggtttaagccaataaacctaagacttttagaacttaggttgtagaggcaaa 380

                                                                       
Query: 181 aggattagaaattcaaggtcagctctggctacatatcaagtttgagatcagattagacca 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 aggattagaaattcaaggtcagctctggctacatatcaagtttgaggtcagattagacca 440

                                                                       
Query: 241 taggagaccctgtctcaataaatcaattaatacataaaaaaacataaagaaggaattaag 300
           ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 taggagaccctgtcttaataaatcaattaatacataaaaaa-cataaagaaggaattaag 499

                                                                       
Query: 301 aaattaaattactctataagaaaggaacagaagcagagtttcagcaagcagagttttttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aaattaaattactctataagaaaggaacagaagcagagtttcagcaagcagagttttttt 559

                                                 
Query: 361 ttttttt----agcaagctttgtttctgacgcatgatg 394
           |||||||    |||||||||||||||||||||||||||
Sbjct: 560 tttttttttttagcaagctttgtttctgacgcatgatg 597


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 797
Length adjustment: 9
Effective length of query: 385
Effective length of database: 788
Effective search space:   303380
Effective search space used:   303380
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)