Query= MSMg01no371_o01.b1 MSMg01no371_o01.b1 CHROMAT_FILE:
MSMg01no371_o01.b1 PHD_FILE: MSMg01no371_o01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:29 2005
(554 letters)
>mm_chr3_73707703_73708662
Length = 960
Score = 901 bits (466), Expect = 0.0
Identities = 524/562 (93%), Gaps = 32/562 (5%)
Strand = Plus / Plus
Query: 1 aagattcattcttacaaatacccacttttaaatcttttatttatttatttatttatttat 60
|||||||||||||||||||||||| |||||||||| |
Sbjct: 223 aagattcattcttacaaatacccatttttaaatct------------------------t 258
Query: 61 ttatttatttatttatttatttatctatctacttatttatttacactccaaa-tttattc 119
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 259 ttatttatttatttatttatttatctatctacttatttatttacactccaaattttattc 318
Query: 120 cccacccca-cccccccagtccaccctctgacagttccacatctcatacctcctccccac 178
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 319 cccaccccaccccccccagttcaccctctgacagttccacatctcatacctcctccccac 378
Query: 179 atcctgactccatggggatgtccccatgagtatgaatgctacttacttatctctgaattt 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 atcctgactccatggggatgtccccatgagtatgaatgctacttacttatctctgaattt 438
Query: 239 ctcacacataatccatcaatctatctttctgccatgtgtt------tgtgtatgtgtgtt 292
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 439 ctcacacataatccatcaatctatctttctgccatgtgtttgtgtgtgtgtgtgtgtgtt 498
Query: 293 tatgcacatgctagtgaattaatcaaatgacatctttaaagaataaattatgtcctgtcc 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tatgcacatgctagtgaattaatcaaatgacatctttaaagaataaattatgtcctgtcc 558
Query: 353 tttgtgtaacagccaaagatcacttcaaatcatcagtcttgaataagtacatctttgcca 412
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 559 tttgtgtaacagccaaagatcacttcaaatcatcagtcttgaacaagtacacctttgcca 618
Query: 413 gttcagcctttaagtcagcatttattgaaatttttattattatacttttaaattaaatgt 472
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 619 gttcagcctttaagtcagcattgattgaaatttttattattatacttttaaattaaatgt 678
Query: 473 gtagaaggaatctctttatgtctgtttgaaagctttacctgtcaaataaagctgtttggt 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gtagaaggaatctctttatgtctgtttgaaagctttacctgtcaaataaagctgtttggt 738
Query: 533 ctgtagctgaagcaaaaaatat 554
||||||||||||||||||||||
Sbjct: 739 ctgtagctgaagcaaaaaatat 760
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 960
Length adjustment: 10
Effective length of query: 544
Effective length of database: 950
Effective search space: 516800
Effective search space used: 516800
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no371_o01.g1 MSMg01no371_o01.g1 CHROMAT_FILE:
MSMg01no371_o01.g1 PHD_FILE: MSMg01no371_o01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:29 2005
(249 letters)
>mm_chr3_73879955_73880603
Length = 649
Score = 402 bits (208), Expect = e-117
Identities = 233/248 (93%), Gaps = 11/248 (4%)
Strand = Plus / Minus
Query: 1 ccacctctgattaggttcagtttccaatttttttctttctcttttctttttcttttcttt 60
|||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 521 ccacttctgattaggttcagtttccaatttttttctttc-----------tcttttcttt 473
Query: 61 tcctttttctctttctttttttagttgaaatgcttttattttgatatttgtagggcagta 120
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct: 472 tcctttttctctttctttttttatttgaaatgcttttattttgatatttgtggggcagta 413
Query: 121 agctgatctggtcccctgttgagagcacaggctttgaaccctggagacctggctggttac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 agctgatctggtcccctgttgagagcacaggctttgaaccctggagacctggctggttac 353
Query: 181 ttatagccctcaaggaatggctggtgttcagccacaccccttgggaccctgatttctgtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 352 ttatagccctcaaggaatggctggtgttcagccacaccccttgggaccctggtttctgtt 293
Query: 241 gcagctac 248
||||||||
Sbjct: 292 gcagctac 285
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space: 153600
Effective search space used: 153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
