BAC Information

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BAC

Clone NameMSMg01-371P17
Chromosome3 (Build37)
Map Location 76,488,267 - 76,488,670
singlet/doubletsinglet
Overlap geneFstl5
Upstream geneGolph4
Downstream geneLOC100041625, LOC100041635, Dnmt3a-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-371P17.T7 (MSMg01no371_p17.b1)MSMg01-371P17.TJ (MSMg01no371_p17.g1)
ACCAG478355AG478356
length768760
length of high quality
(start - end)		492 (77 - 568)472 (47 - 518)
definitionCHROMAT_FILE: MSMg01no371_p17.b1 PHD_FILE: MSMg01no371_p17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:38 2005CHROMAT_FILE: MSMg01no371_p17.g1 PHD_FILE: MSMg01no371_p17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATTGCAAGGATGTTTACTACATC
CAAGAAAACACAGAAAATAACTAGTTCCATACCAGCAAAAAATAAGGAAA
GTGCATGCACATGCACACACACACACACACACACACACACAAACACACAC
ACACCACTAACATCAAAATAACAGAAAATAACTATCACTGGCCATTAATA
TCTCTCAATAGCAGTGAACTCAATTTCCCAATAAAAATACATAGTCTATC
AGAATGGATGCAAAAACAGGATCCATTATTCTGTTGCATACAAGAAATAC
ACTTCAGAAATAAAGATAGACATTACTTCACCTCAAAGTAAAAGGCTAGA
AAAAAGTTTTCAAGCAAATGGACCCAATAAACAGGCTGGAGTAGCCATTC
TAATATCTAATTAAATAGACTTTCTACAAAAATTAACCAAAAGAGACTGG
GAAGGACACTTTGTACACATCAAAGGAAAAATCCACCAAAATTATATCCC
AATTCTGAACATCCAGTCCTCAAATGCAATACCCACATTTGTAAAAGAAC
ATTGCTAAAGCTGACCTTGGGCATTAAACCCCACACATAATAGTGGGAAG
ACTCATCCCCCACCAATCCCCATAAAAAAATCTTCCCAATAAAAACTATT
CCGAAGAAGAATAATGAACTTAACNGAAATTACAATTCAAACTATCCCTA
CGAACATTCTAAGAAAAT

NTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTGACTTGTACACGTGAAGTGTGCAGTATACAGCTGTTTACTTA
AGCACTTTTCTAAGGCCCTGAGAGCTGAGCCTTGGGTAGGCTTATTCGTA
GAACAGGTTCTTTCCAACACAGAGCTCCAACAGAGAGCAACTCATCAGCC
TGCATTATTTCTTTAACAGCTTTCAAAAAGCCTGAGACACTCTGCTCCAT
TACTTTGCAGGGCTTATGCAGGAGTTCCAGAATAACTTATGGTTCATGCA
TAATCTTTCAGAAGAGTGAACAACAGAGCTTCAATTGCTGTGGATGACCT
TGGAGACACATCACTCTGTAATCACTCTGCATGTGTTTTTCTTGCCTTAT
GGCCTCTGTATACTTTATTCAAAATTAGCTTTTCTCTCTAAAACATATAT
ATATATATAAATATATATATATATATATATATATATATATATATATATAT
ATTCCCGTACATATACTACACATAGGTTTTCTGACAAAGAACATACTTTT
TGATGATCATTCTTTTGAGTATAGAGGTTTTTGATATACAGGGTAAAAAG
GAAGGGAATACCGTATTGTCAACCCACATAAAACTTCTGAAGCTCGTTAT
TGTAGGAGAAATATCCTAAAGCAGCCCTTGTATGTGAGGCCCTCCCTCTC
TTCTGAATATTTGGGGTGGAGAGTGCGAATTCTTTTTTATTGTGAGTTAT
ACAAGAACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no371_p17.g1 MSMg01no371_p17.g1 CHROMAT_FILE:
MSMg01no371_p17.g1 PHD_FILE: MSMg01no371_p17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:38 2005
         (472 letters)



>mm_chr3_76488073_76488944
          Length = 872

 Score =  766 bits (396), Expect = 0.0
 Identities = 402/404 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttgacttgtacacgtgaagtgtgcagtatacagctgtttacttaagcacttttc 64
           |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 gaattcttgacttgcacaagtgaagtgtgcagtatacagctgtttacttaagcacttttc 539

                                                                       
Query: 65  taaggccctgagagctgagccttgggtaggcttattcgtagaacaggttctttccaacac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 taaggccctgagagctgagccttgggtaggcttattcgtagaacaggttctttccaacac 479

                                                                       
Query: 125 agagctccaacagagagcaactcatcagcctgcattatttctttaacagctttcaaaaag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 agagctccaacagagagcaactcatcagcctgcattatttctttaacagctttcaaaaag 419

                                                                       
Query: 185 cctgagacactctgctccattactttgcagggcttatgcaggagttccagaataacttat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 cctgagacactctgctccattactttgcagggcttatgcaggagttccagaataacttat 359

                                                                       
Query: 245 ggttcatgcataatctttcagaagagtgaacaacagagcttcaattgctgtggatgacct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggttcatgcataatctttcagaagagtgaacaacagagcttcaattgctgtggatgacct 299

                                                                       
Query: 305 tggagacacatcactctgtaatcactctgcatgtgtttttcttgccttatggcctctgta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 tggagacacatcactctgtaatcactctgcatgtgtttttcttgccttatggcctctgta 239

                                                       
Query: 365 tactttattcaaaattagcttttctctctaaaacatatatatat 408
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tactttattcaaaattagcttttctctctaaaacatatatatat 195


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space:   398244
Effective search space used:   398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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