Query= MSMg01no372_m11.b1 MSMg01no372_m11.b1 CHROMAT_FILE:
MSMg01no372_m11.b1 PHD_FILE: MSMg01no372_m11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:36 2005
(615 letters)
>mm_chr3_131382681_131383695
Length = 1015
Score = 934 bits (483), Expect = 0.0
Identities = 562/615 (91%), Gaps = 43/615 (6%)
Strand = Plus / Plus
Query: 1 gcacggagggtcacactgtaaagactcgcgtgacgatattagggatctatagagaagtga 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 gcacggagggtcacactgtaaagactcgagtgacgatattagggatctatagagaagtga 260
Query: 61 agctcacatttgccagctgactatccttggctctgtgccaggaaaaccacttattattac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agctcacatttgccagctgactatccttggctctgtgccaggaaaaccacttattattac 320
Query: 121 tttgtgcctcacagtgctagggtaaagctttccatatagctttagcatttgcctgtgcca 180
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttgcacctcacagtgctagggtaaagctttccatatagctttagcatttgcctgtgcca 380
Query: 181 ttggattcgccaactccccctctactgcttagtttttcttgttagcttgacctgatctga 240
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 ttggattcgccaactccccctctactgcttagtttttattgttagcttgacctgatctga 440
Query: 241 ggtttcacctgctacactgttcttatagtgacacaagccagaatcatctgggaagaggga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtttcacctgctacactgttcttatagtgacacaagccagaatcatctgggaagaggga 500
Query: 301 gcctttattgagaaaatgcctctgtcacattggcctgtaggcaagtctctgggacatttt 360
||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 501 gcctttattgagaaaatgcct---------------gtaggcaagtccctgggacatttt 545
Query: 361 cttgattgacaaatgatgtgggaggagcccagtccactgtaggggatgcccagttcctgg 420
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 cttgattgacaattgatgtgggaggagcccagtccactgtaggggatgcccagttcctgg 605
Query: 421 tcaggtggaaccgggataaatgagaaaagaacagagcaagtcttgggaagcaaggcagta 480
|||||||||||||||||||||||||||||||| |||| ||||||||||| |
Sbjct: 606 tcaggtggaaccgggataaatgagaaaagaaccgagcgagtcttgggaa--a-------- 655
Query: 481 agtggcatccctccaaagcctccgcttcagttcctgctcccaggttctcttctccgggtt 540
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 ------------------cctccgcttcagttcctgctcccaggttctcttctccgggtt 697
Query: 541 tctgccttgtgctcctgccttggcctcccatgctggactgtgccctgtaagccgaacaca 600
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 tctgccttgtgttcctgccttggcctcccatgctggactgtgccctgtaagccgaacaca 757
Query: 601 tcttttcctctccca 615
||||||||| |||||
Sbjct: 758 tcttttcctttccca 772
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space: 608025
Effective search space used: 608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no372_m11.g1 MSMg01no372_m11.g1 CHROMAT_FILE:
MSMg01no372_m11.g1 PHD_FILE: MSMg01no372_m11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:36 2005
(475 letters)
>mm_chr3_131409068_131409944
Length = 877
Score = 704 bits (364), Expect = 0.0
Identities = 382/388 (98%), Gaps = 2/388 (0%)
Strand = Plus / Minus
Query: 3 ataagtcatagagcttcag-gaaaaatatgagaaatatagaagtgcatctgttggaggaa 61
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ataagtcatagagcttcagcaaaaaatatgagaaatatagaagtgcatctgttggaggaa 329
Query: 62 agaaaggaagcttgttctaaaagagaaaaagtcataaaag-aaaaaaaataacttggcta 120
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 328 agaaaggaagcttgttctaaaagagaaaaagtcataaaagaaaaaaaaataacttggcta 269
Query: 121 taaaaaaaagtttgtttcctaatttaaaggcaccataagtaaagctggtgggtaaaaacc 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 taaaaaaaagtctgtttcctaatttaaaggcaccataagtaaagctggtgggtaaaaacc 209
Query: 181 tgactcttggactgagcccagagacccctatggaagggttaggggaaggactgaggagct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 tgactcttggactgagcccagagacccctatggaagggttaggggaaggactgaggagct 149
Query: 241 gaaggggatggcaaccttctgttgttgtaggaagaacaacagactcaactaatcggaccc 300
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 148 gaaggggatggcaaccttctgttgttgtcggaagaacaacagactcaactaatcggaccc 89
Query: 301 ctcagagttcccagggactgaactaccaatcaaagagcatgcattgcctggtctttggct 360
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 88 ctcagagttcccagggactgaaccaccaatcaaagagcatgcattgcctggtctttggct 29
Query: 361 cccactacatacatagcagaggattgcc 388
||||||||||||||||||||||||||||
Sbjct: 28 cccactacatacatagcagaggattgcc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 877
Length adjustment: 10
Effective length of query: 465
Effective length of database: 867
Effective search space: 403155
Effective search space used: 403155
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
