XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGTCC
AAATCTTAAGTATCATAGACTATGTTTCATAGATAGAAGATAACCGTATA
ATGAATAGGATTATTACAAAATAAGGACTATCATTAATGGTTTACAGAAA
TAATATTTTTCCCATTTAAAAAGTTGTGCCAACAGCCATCCACTGAACAG
AGCACAGGATCTCCAATGAAGGAGCTAAAGAAAGTACTCAAGGAGCTGAA
GGGTTTTGCAGCCCCATTGGAGGAACAACAATATGGACTAACCAGTACCC
TCAGAGCTCCCTGGGATCAAACCACCAATCAAAGAAAGGACATAGTGGAA
CTCATGGTTCTAACTGCATATGTAGTGGAGGATGACCTAGTCGGTTATCA
ATGGGAGGAGAGGCCCTTGTTCCTGTAAATGTTATATGCCCCAATATAGG
GGAATGCCAGGGCCAGGAAGTGGGACTGGGTGGGTTGGTGAGTAGGGAGG
TGGGGGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNTNNNTN
NTTNNTNNTTTTTTNTTTTNNNTTTT

GGATGGATGAGAGGAGNAGGAGAGNNAGAGNAGAGGGAGAGGAGGAGAGG
AGGGTGGGGNNGGNNGGGANGGGNNNNCCTATGCXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCA
GTGTCATAGAAACATATGGAACAAATATATTATTAACATATGAATGATGT
GTGTGAAAACATTGTTCAAATTACAAGGAAAGAGTTGATTGCTGATTCTA
GACCTGAAAAACAAATTACACACATAAGCAATTTTTCAATTTTGTATATT
GGGACTCAAACTTTCTATAATATTTTAAAAGTTTTTTTCCATTTGAAATA
TATATACCTTTAAATACCAGTCATAGCATTACATTGACTCAATTTTTATA
AAAATAACTGTTTTTTATATATTTGAAAATATGCTTGGCACAAAAATTAC
GTTTTAAATACACAACAGTCAATAAAACATATACTGTATTCAAAATTTAA
AACATATTTTCCTATTATTTTCACACAATATCAGCATTTTCTTTTGCAGG
GTATGTGTGTGAGAATGTGTGTTTATTTGGAAAATTGTAAAAGACCAAAA
ACTTCTGTACATGTACTGACATAAAGGTTAATTATACTTCTTGCTACCTT
CTTTAACAATGAGAAATGAGGCAAAGGTTACAGTTGCCAGTTTGGTTAAA
GGTGTGCTTTAAAGACTTGAGTGGTCACATTTTAATTATTGGCTATGCAC
TGCATTTACTACAAGGAGGGAGAATTAATACCTATAGGCATTCTTCATGT
TTTTCACG

Query= MSMg01no373_a01.g1 MSMg01no373_a01.g1 CHROMAT_FILE:
MSMg01no373_a01.g1 PHD_FILE: MSMg01no373_a01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:52 2005
         (545 letters)



>mm_chr3_12607459_12608406
          Length = 948

 Score =  862 bits (446), Expect = 0.0
 Identities = 533/586 (90%), Gaps = 45/586 (7%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagtgtcatagaaacatatggaacaaatatattattaacatatgaatgatgtgtgtgaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 cagtgtcatagaaacatatggaacaaatatattattaacatatgaatgatgtgtgtgaaa 226

                                                                       
Query: 61  acattgttcaaattacaaggaaagagttgattgctgattctagacctgaaaaacaaatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 acattgttcaaattacaaggaaagagttgattgctgattctagacctgaaaaacaaatta 286

                                                                       
Query: 121 cacacataagcaatttttcaattttgtatattgggactcaaactttctataatattttaa 180
           ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
Sbjct: 287 cacacataagcaatttttcaattttgtattttcggactcaaactttctataatatttt-a 345

                                                                       
Query: 181 aagtttttttccatttgaaatatatataccttt--------aa-----atacc----agt 223
           || ||||||||||||||||||||||||||||||        ||     |||||    |  
Sbjct: 346 aattttttttccatttgaaatatatatacctttatatttgaaatatatatacctttaa-- 403

                                                                       
Query: 224 catagcattacattgactcaatttttata--------------------aaaa-taactg 262
            ||| ||||| ||||||||||||||||||                    |||| ||||||
Sbjct: 404 -ataccattaaattgactcaatttttataaatttttataaaatttttataaaagtaactg 462

                                                                       
Query: 263 ttttttatatatttgaaaatatgcttggcac-aaaaattacgttttaaatacacaacagt 321
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 463 ttttttatatatttgaaaatatgcttggcacaaaaaattacgttttaaatacacaacagt 522

                                                                       
Query: 322 caataaaacatatactgtattcaaaatttaaaac--atattttcctattattttcacaca 379
           ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 523 caataaaacatatactgtattcaaaatttaaaacatatattttcctattattttcacaca 582

                                                                       
Query: 380 atatcagcattttcttttgcagggtatgtgtgtgagaatgtgtgtttatttggaaaattg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 583 atatcagcattttcttttgcagggtatgtgtgtgagaatgtgtgtttatttggtaaattg 642

                                                                       
Query: 440 taaaagaccaaaaacttctgtacatgtactgacataaaggttaattatacttcttgctac 499
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 643 taaaagaccaaaaacttctgtacatgtattgacataaaggttaattatacttcttgctac 702

                                                         
Query: 500 cttctttaacaatgagaaatgaggcaaaggttacagttgccagttt 545
           |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 703 cttctttaacaatgagaaatgaggcaaaggttacagatgccagttt 748


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 948
Length adjustment: 10
Effective length of query: 535
Effective length of database: 938
Effective search space:   501830
Effective search space used:   501830
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)