BAC Information

Click to search

BAC

Clone NameMSMg01-373D17
Chromosome3 (Build37)
Map Location 10,749,784 - 10,889,729
singlet/doubletdoublet
Overlap geneLOC670564
Upstream genePag1, LOC621504, Fabp5, LOC100041480, Pmp2, Fabp9, Fabp4, 1700008G05Rik, Impa1, Slc10a5, Zfand1, Chmp4c, Snx16
Downstream geneLOC383826, EG667978, LOC667999
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-373D17.T7 (MSMg01no373_d17.b1)MSMg01-373D17.TJ (MSMg01no373_d17.g1)
ACCAG479310AG479311
length731709
length of high quality
(start - end)		534 (14 - 547)510 (59 - 568)
definitionCHROMAT_FILE: MSMg01no373_d17.b1 PHD_FILE: MSMg01no373_d17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:09 2005CHROMAT_FILE: MSMg01no373_d17.g1 PHD_FILE: MSMg01no373_d17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,889,253 - 10,889,729)(10,749,784 - 10,750,293)
sequence
CTCACTATGTGCAGAGGATCCGCGGAATTCTACACTATTGTAAGCAGTAT
TGTTTAAATCTGGCAATGTACTACACCTAGAAAATATGTCTCCTTTATGT
AACCTAGAAAGTTACATTTCAAATAGAACATATGGAGCACTAAGCAAACA
TCTAAATACAAATATATAGTTTTACATGTACAAAAATATGGACATATTTG
TGTCAGAAAGATGGTTCAGTGCATAAGGTTATCAATACTGATGGCCTGTT
TTTGAGTCCCAGGAAGACATAATGGAGAGAGCCAAATCCTAGATGTTGTA
TTCTGACCTCCAAGTCCATTCTGCACACACAAACCCACATAAGTGACTTC
ACATACACTAAATAAATAAATGTAAATAAAGCATTTAAAAATAACATTGA
TGTAATTTACCAGGTGGTTCTGATTAGAGCTAGAAATTACTAATACATGC
AATACTGAATAGTTGAAGTCTAATGCTTATGAATCTCTAAGAAAATAATT
CATATGCCGAGCGTGGTGACACATGCGTTTAATTCTAGCACTTGGGAGGC
AGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAC
TTCCAGGACAGCCAGGGCTACACCAAGAAACCCTGTCTCTAAAAACNNAA
TAAAAAAAGAAAGAAAGAAAGAAATAACTCATGTTACTAGTAAGGTATAC
TCTGGGTTTGGGGAGGCCAAACCAATTTGGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXACTAGGTTATTGGTGTTTCCTTTGGATTGATTGATTTGCACA
TGAAAGATATGTCCTTTACTGGCAAATATTTCTACTTTTTAGTAGGGATG
TACTGACCCAGTCAGGGCTAGTCCTTTTCCTCCTGAGGTAGTAATACTCA
GATGAAAAAAATCAAAATGCAGAAAATAAAAAAGACCTGTCCAGAGGAGT
AGTAAACATTTACTACGGAATCCAGGGACAATTTATATTGCTTTATTGTC
ATGGCATTTCTTAAGATAGAACTTATGATTCAGTTTTATAGCTGAAGGAA
TTGATGTTGAGGGTTGTGAGAACAGACCTACTTTGGAATAAGTCCCTGTG
TGTATTACTGCACTTGCTTGGTGGTACAGAGTAACATAAATGATATGTAA
GGTTTCTTTTCAGATGTGCTATCTATAGTGTCCCAGTGAGGAATGATGTA
AAAGGCTTACCATGGCCTTAAAGGGGATATTGGTACAGTGGCAGGAGTCA
GCATCCTTCATATCTCCATGTTGACCTTCTTGGACCAGTGTGGCTGGGGA
ACACTGAGTGACTTCAGTGGCAAGGATTCAAAAACAACTTCATGGTAGAA
CTGTTTGGCTTCCTTTATGTAGCCTATCATACCTTCTGCAATTAGCAATA
CTTTTGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no373_d17.b1 MSMg01no373_d17.b1 CHROMAT_FILE:
MSMg01no373_d17.b1 PHD_FILE: MSMg01no373_d17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:09 2005
         (534 letters)



>mm_chr3_10888796_10889729
          Length = 934

 Score =  907 bits (469), Expect = 0.0
 Identities = 475/477 (99%)
 Strand = Plus / Minus

                                                                       
Query: 58  ctacacctagaaaatatgtctcctttatgtaacctagaaagttacatttcaaatagaaca 117
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 934 ctacacctagaaaatatgtctcctttatgtaacctagaaagttacatttcaaataggaca 875

                                                                       
Query: 118 tatggagcactaagcaaacatctaaatacaaatatatagttttacatgtacaaaaatatg 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 874 tatggagcactaagcaaacatctaaatacaaatatatagttttacatgtacaaaaatatg 815

                                                                       
Query: 178 gacatatttgtgtcagaaagatggttcagtgcataaggttatcaatactgatggcctgtt 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 gacatatttgtgtcagaaagatggttcagtgcataaggttatcaatactgatggcctgtt 755

                                                                       
Query: 238 tttgagtcccaggaagacataatggagagagccaaatcctagatgttgtattctgacctc 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 tttgagtcccaggaagacataatggagagagccaaatcctagatgttgtattctgacctc 695

                                                                       
Query: 298 caagtccattctgcacacacaaacccacataagtgacttcacatacactaaataaataaa 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 caagtccattctgcacacacaaacccacataagtgacttcacatacactaaataaataaa 635

                                                                       
Query: 358 tgtaaataaagcatttaaaaataacattgatgtaatttaccaggtggttctgattagagc 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 tgtaaataaagcatttaaaaataacattgatgtaatttaccaggtggttctgattagagc 575

                                                                       
Query: 418 tagaaattactaatacatgcaatactgaatagttgaagtctaatgcttatgaatctctaa 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 tagaaattactaatacatgcaatactgaatagttgaagtctaatgcttatgaatctctaa 515

                                                                    
Query: 478 gaaaataattcatatgccgagcgtggtgacacatgcgtttaattctagcacttggga 534
           |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gaaaataaatcatatgccgagcgtggtgacacatgcgtttaattctagcacttggga 458


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space:   484176
Effective search space used:   484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no373_d17.g1 MSMg01no373_d17.g1 CHROMAT_FILE:
MSMg01no373_d17.g1 PHD_FILE: MSMg01no373_d17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:09 2005
         (510 letters)



>mm_chr3_10749584_10750493
          Length = 910

 Score =  971 bits (502), Expect = 0.0
 Identities = 508/510 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actaggttattggtgtttcctttggattgattgatttgcacatgaaagatatgtccttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actaggttattggtgtttcctttggattgattgatttgcacatgaaagatatgtccttta 260

                                                                       
Query: 61  ctggcaaatatttctactttttagtagggatgtactgacccagtcagggctagtcctttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctggcaaatatttctactttttagtagggatgtactgacccagtcagggctagtcctttt 320

                                                                       
Query: 121 cctcctgaggtagtaatactcagatgaaaaaaatcaaaatgcagaaaataaaaaagacct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctcctgaggtagtaatactcagatgaaaaaaatcaaaatgcagaaaataaaaaagacct 380

                                                                       
Query: 181 gtccagaggagtagtaaacatttactacggaatccagggacaatttatattgctttattg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtccagaggagtagtaaacatttactacggaatccagggacaatttatattgctttattg 440

                                                                       
Query: 241 tcatggcatttcttaagatagaacttatgattcagttttatagctgaaggaattgatgtt 300
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 441 tcatggcatttcttaagatagaacttatgattcagttttataactgaaggaattgatgtt 500

                                                                       
Query: 301 gagggttgtgagaacagacctactttggaataagtccctgtgtgtattactgcacttgct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagggttgtgagaacagacctactttggaataagtccctgtgtgtattactgcacttgct 560

                                                                       
Query: 361 tggtggtacagagtaacataaatgatatgtaaggtttcttttcagatgtgctatctatag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tggtggtacagagtaacataaatgatatgtaaggtttcttttcagatgtgctatctatag 620

                                                                       
Query: 421 tgtcccagtgaggaatgatgtaaaaggcttaccatggccttaaaggggatattggtacag 480
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 621 tgtcccagtgaggaatgatgtaaaaggcttagcatggccttaaaggggatattggtacag 680

                                         
Query: 481 tggcaggagtcagcatccttcatatctcca 510
           ||||||||||||||||||||||||||||||
Sbjct: 681 tggcaggagtcagcatccttcatatctcca 710


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space:   450000
Effective search space used:   450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |