Query= MSMg01no373_h07.b1 MSMg01no373_h07.b1 CHROMAT_FILE:
MSMg01no373_h07.b1 PHD_FILE: MSMg01no373_h07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:25 2005
(428 letters)
>mm_chr3_157675788_157676615
Length = 828
Score = 766 bits (396), Expect = 0.0
Identities = 413/420 (98%), Gaps = 4/420 (0%)
Strand = Plus / Plus
Query: 10 ggaattctttatcatatctaatgtaaaaatgtgacctacagctagcactctggactattt 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 ggaattctttatcatatctaatgtaaaaatgtgacctacagctagcactctggactattt 269
Query: 70 ttactttcttggtggtatttttgagacagggtgacataagttagccttgaattggcattc 129
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 270 ttactttcttggtggtatttttgagacagggtcacataagttagccttgaattggcattc 329
Query: 130 ttctgtcttcaagaataccaaagcttatttta-tttttttttaagatttatttacttatt 188
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 330 ttctgtcttcaagaataccaaagcttattttattttttttttaagatttatttacttatt 389
Query: 189 atatataagtacacttcagacatcccaaaagagggccaccatgtggtcgctgggatttga 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 atatataagtacacttcagacatcccaaaagagggccaccatgtggtcgctgggatttga 449
Query: 249 actcaggacctttggaatagcagacagcgctcttaaccgctgagccatctctccagcccc 308
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 450 actcaggacctttggaatagcagacagtgctcttaaccgctgagccatctctccagcccc 509
Query: 309 attttttttttttttttttttttgggttttagagacagggtttctctgtgtagccctggc 368
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 510 attttttttttttttttttt---ggtttttagagacagggtttctctgtgtagccctggc 566
Query: 369 tggcctcgaactcagaaatccgcctgcctctgcctcccaagtgctgggattaaaggcgtg 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tggcctcgaactcagaaatccgcctgcctctgcctcccaagtgctgggattaaaggcgtg 626
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space: 343161
Effective search space used: 343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no373_h07.g1 MSMg01no373_h07.g1 CHROMAT_FILE:
MSMg01no373_h07.g1 PHD_FILE: MSMg01no373_h07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:25 2005
(213 letters)
>mm_chr3_157856544_157857156
Length = 613
Score = 375 bits (194), Expect = e-109
Identities = 206/210 (98%)
Strand = Plus / Minus
Query: 1 catcacaataactcgcttttcagagacttttagtgttattatattcctttgattattgtt 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 catcacaataactcgtttttcagagacttttagtgttattatattcctttgattattgtt 351
Query: 61 tcagggaagaaataaggaaagtgtcagtcctctaaaactaacttgaaaatcactactgac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 tcagggaagaaataaggaaagtgtcagtcctctaaaactaacttgaaaatcactactgac 291
Query: 121 tataatagaaataaaacaatggtactcctccagggttctggtttagttttgttgaggggg 180
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 290 tataataggaataaaacaatggcactcctccagggttctggtttagttttgttgaggggg 231
Query: 181 tatttgttttacttggtttggtttggtttg 210
|||||||||||||||||||||||| |||||
Sbjct: 230 tatttgttttacttggtttggtttagtttg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 213
Length of database: 613
Length adjustment: 9
Effective length of query: 204
Effective length of database: 604
Effective search space: 123216
Effective search space used: 123216
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
