BAC Information

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BAC

Clone NameMSMg01-373I12
Chromosome3 (Build37)
Map Location 126,151,815 - 126,152,055
singlet/doubletsinglet
Overlap genenone
Upstream geneNdst4, Ugt8a, Arsj
Downstream geneCamk2d, Ank2, LOC100043749
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-373I12.T7 (MSMg01no373_i12.b1)MSMg01-373I12.TJ (MSMg01no373_i12.g1)
ACCAG479540AG479541
length717742
length of high quality
(start - end)		603 (18 - 620)243 (76 - 318)
definitionCHROMAT_FILE: MSMg01no373_i12.b1 PHD_FILE: MSMg01no373_i12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:30 2005CHROMAT_FILE: MSMg01no373_i12.g1 PHD_FILE: MSMg01no373_i12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTCCTATTTCGAGAGGATCCGCGGAATTCTTTGTTTATCTCTGAGCCCC
ATTTTTAATGGGGTTATTTGATTTTCTGGAGTCCACCTTCTTGAGTTCTT
TATATATATTGGATATTAGTCCCCTATCTAATTTAGGATAGGTAAAGATC
CTTTCCCAGTCTGTTGGTGGTCTTTTTGTCTTATTGACGGTGTCTTTTGC
CTTGCAGAAACTTTGCAATTTTATTAGGTCCCATTTGTCTATTCTCCATC
TTACAGCACAAGCCATTGCTGTTCTATTCAGGAATTTTTCCCCTGTGTTC
CATATCTTCGAGGCGTTTCCCCACTTTCTCCTATATAAGTTTCAGTGTCT
CTGGTTTTATGTGGAGTCCTTAATCAACTTAAATTTGACCTTAGTACAAG
GAGATAGGAATGGATCAATTCGAATTCTTCTGCATGGTAACCTCCAGTTC
TGCCAGCACCATTTGTTGAAAATGCTGTCTTTTGTCCACTGGATGGTTTT
AGCTCCCTTGTCAAAGATCAAGTGACCATAGGTGTGTGGGTTCATTTCTG
GGTCTTCAGTTCTATTCCATTGGTCTACTGGTCTGTCGCTATACCAGTAC
CATGCAGTTTTTATCATAATTGCTCTGTAGTACAGCTTTAGGCCAAGCAT
GGTGATTCCATCAGAGGTTCTTTTAATCTTGANAAGAGTTTTTGCTATCC
TAAGTTTTTTTCTAATN

CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTCCACATACACAGGAACAAAAAT
AAGCAAAAAGCTCTTTAGTTGTAGTATGCATCTAGTTTTGGCTAATGCCC
AAAAAGGAGCTAGCCTCAAACAGAAAACTTGACTAACCTATTTAGACTGT
ATGTTTATACATTCCACCTACATGGATATACTTAAACCTTTTCCAGTTCC
TGGCCCCAGGTTACAATTTGAACAATTTAAACAGAGACAGGAGACTGTAA
TCTGGCAGTTTAGGCAGATGTATTTACTTCACTGTAAAGATGTTGCCAGG
ATTATTTTGTAAACCTGTGGTGTTGGTTTTTTTTCCAATAATTGTCACAT
AGGGTCATCTTGTCAAACATGGCTGAATTATGCATTCCTTAAGAAAATAA
AGAGGGCTTTAAGGTGGACCAGGGCTTAAGATATGCCTGATAGAAGTCTT
TCATAGGCAAAAGAGCCTAATGACTCACTACCAGTCAGGGTTGTCTCCTT
TTGTATGGGAATGAAACCCAAAACCTGATCCATTCTGATCACCCTTTACA
TGCTACCACGCCTAAATTTGGGCTTATTCCCAGCAAACCCGGTTTAGGCA
CTGCTTATTTTTGGGGCAATTTTAAAGGCAGACCCCCCCTAATAGTAAGC
CTACTTTTGTGTGGACCCACCGTTCTCTTAAACCTATTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no373_i12.g1 MSMg01no373_i12.g1 CHROMAT_FILE:
MSMg01no373_i12.g1 PHD_FILE: MSMg01no373_i12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:30 2005
         (243 letters)



>mm_chr3_126151613_126152255
          Length = 643

 Score =  435 bits (225), Expect = e-126
 Identities = 237/241 (98%)
 Strand = Plus / Minus

                                                                       
Query: 3   tccacatacacaggaacaaaaataagcaaaaagctctttagttgtagtatgcatctagtt 62
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tccacatacacaggaacaaaagtaagcaaaaagctctttagttgtagtatgcatctagtt 384

                                                                       
Query: 63  ttggctaatgcccaaaaaggagctagcctcaaacagaaaacttgactaacctatttagac 122
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ttggctaatacccaaaaaggagctagcctcaaacagaaaacttgactaacctatttagac 324

                                                                       
Query: 123 tgtatgtttatacattccacctacatggatatacttaaaccttttccagttcctggcccc 182
           |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 323 tgtacgtttatacattccacctacatggatatacttaaaccttttccaggtcctggcccc 264

                                                                       
Query: 183 aggttacaatttgaacaatttaaacagagacaggagactgtaatctggcagtttaggcag 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aggttacaatttgaacaatttaaacagagacaggagactgtaatctggcagtttaggcag 204

            
Query: 243 a 243
           |
Sbjct: 203 a 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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