BAC Information

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BAC

Clone NameMSMg01-373L21
Chromosome3 (Build37)
Map Location 90,113,355 - 90,113,764
singlet/doubletsinglet
Overlap genenone
Upstream geneEfna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3, LOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She, Il6ra, Atp8b2, LOC668102, Hax1, Ubap2l, 4933434E20Rik, 1700094D03Rik, Tpm3, Nup210l, Rps27, Rab13, Jtb, Creb3l4, LOC100042397, Slc39a1, Crtc2, Dennd4b
Downstream geneGatad2b, Slc27a3, Ints3, Npr1, LOC668141, Ilf2, Snapap, 2500003M10Rik, S100a1, S100a13, S100a14, S100a16, EG628324, S100a3, S100a4, S100a5, S100a6, S100a7a, S100a8, S100a9, LOC668165, LOC383949, Pglyrp4, LOC329706, EG545541, LOC635737, EG668174, LOC668179, LOC635756, 4930529C04Rik, 9130204L05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-373L21.T7 (MSMg01no373_l21.b1)MSMg01-373L21.TJ (MSMg01no373_l21.g1)
ACCAG479700AG479701
length786750
length of high quality
(start - end)		274 (41 - 314)480 (75 - 554)
definitionCHROMAT_FILE: MSMg01no373_l21.b1 PHD_FILE: MSMg01no373_l21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:46 2005CHROMAT_FILE: MSMg01no373_l21.g1 PHD_FILE: MSMg01no373_l21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTCAGCGAGTACGGCGGATTCTTTA
GAAATACTTATTGTGTGCATTCATGTGGTGTGTGTGTTTGTGTGTGTGTG
TGTTTGTGTGTACACATGGTTACCATGGTTTGTGTGTGGCAGTCAGAGGA
CAACTTTGTAAGTTGGTTCTCTCCTTCCACCTTCATGTGTGTTCCAGTGA
TTGAATCCATTCCAGGATTTTGTGGCAAGGGCCCTTACCCACTGGGCTGA
CCTGATGACCCCTAGTTTTTATGTCCTTTTATTATCCTGCAGATTCCTGT
GTCCAGCTTAAGGTATTTATTCCTAGAACTGGCAGTATTTGATCAACACG
GGAGGAAGTTTGATAATTTCAGCTCACTGATGCTAGAATGTAAGTCTTCC
AACGAGACACTAACTCATTTTGAAGATTCTAATTCAGTGGATATGGTAGC
CAGAGACTATGGCAGTGGGCAGATCCGGCTGTACGGTATTGTAAATAGCT
TGCTAATGTCCTAAGGTGTTAAATCAATGGTTCACAATTGCTTTTCTTAA
TAGCAAATTGGTCCCACTCTTAAATTTTATTCTATGTGCCCTCCTCTTCC
TCATATCTTTCGCCTTTTTTTATATTACCTCCCAACTTTATCTTTGCTCT
ATTCCCATTCTTCTTCAATATTCACTCTTTTCTCTTACTTACTTTTTACA
ATTTTCAAAACATCTTTGTCCTTCTCCTTACCACTTCTTCACTCTGATTC
CGCATCATAAAATTCTTATATACCGCATCTTTTATC

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAACAGCAGCCAGCACTGCATAGTGAG
ACAGGAAACCAGAGTTAAGTGCCACTTTCTAAAGGTTTCACATTAGATAG
TTATAAACACTGGGCAAAAGTCATACTATTTCCATACAAGCTGGAGTTTG
CTTTCTAGAACCCATAAGAGAGGTACTTAAAAGCCCCAACAAAGGTCATG
GCACTCATACAGCTATACTCATATGTGTGTATGAACACACACACACACAC
ACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAAACCCTGAAATCTTAGTTTCCTT
TTCTCTACTTTTTCATGTCCTCAATAAAATCTAGAGCACAATGCAAAAGC
AGATATGGTGACACAAGCCTACAACTCCTGCCTGTGAGAAGTGGAGGCCT
CAAGGGAAGCCTCACCTACACATTGGGTTTGAGGTCAGCCTGGGCTACAT
TAAGAACCTGTCTCAAAGAAAACTCCAAAATAAAAATAAATAAACCCCCC
CCCAAACAACTAAAAAACCGGGGTAGAGAAATAGTTCCCCATTTAGAGAG
CCCATACTCCCTATCTGCTCTTGCGAAAACCGAGTTTAATTCTCCAAAAC
GGGGGGTGGGCTCCCAATCCCCCTAACCCCATAACCTCTTTAAAACAACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no373_l21.g1 MSMg01no373_l21.g1 CHROMAT_FILE:
MSMg01no373_l21.g1 PHD_FILE: MSMg01no373_l21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:46 2005
         (480 letters)



>mm_chr3_90113355_90114234
          Length = 880

 Score =  681 bits (352), Expect = 0.0
 Identities = 399/422 (94%), Gaps = 12/422 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacagcagccagcactgcatagtgagacaggaaaccagagttaagtgccactttctaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 410 aacagcagccagcactgcatagtgagacaggaaaccagagttaagtgccactttccaaag 351

                                                                       
Query: 61  gtttcacattagatagttataaacactgggcaaaagtcatactatttccatacaagctgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 gtttcacattagatagttataaacactgggcaaaagtcatactatttccatacaagctgg 291

                                                                       
Query: 121 agtttgctttctagaacccataagagaggtacttaaaagccccaacaaaggtcatggcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 agtttgctttctagaacccataagagaggtacttaaaagccccaacaaaggtcatggcac 231

                                                                       
Query: 181 tcatacagctatactcatatgtgtgtatgaacacacacacacacacacacacacacagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
Sbjct: 230 tcatacagctatactcatatgtgtgtatgaacacacacacacacacacacacacac---- 175

                                                                       
Query: 241 agagagagagagagagagagagagagagagagagagagagagagagagagagagagagag 300
                   | | | | | | | | | ||||||||||||||||||||||||||||||||||
Sbjct: 174 --------acacacacacacacacacagagagagagagagagagagagagagagagagag 123

                                                                       
Query: 301 agaaaccctgaaatcttagtttccttttctctactttttcatgtcctcaataaaatctag 360
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 122 agaaaccctgaaatcttagtttccttttctccactttttcatgtcctcaataaaatctag 63

                                                                       
Query: 361 agcacaatgcaaaagcagatatggtgacacaagcctacaactcctgcctgtgagaagtgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62  agcacaatgcaaaagcagatatggtgacacaagcctacaactcctgcctgtgagaagtgg 3

             
Query: 421 ag 422
           ||
Sbjct: 2   ag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 125
Number of extensions: 25
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space:   408900
Effective search space used:   408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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