BAC Information

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BAC

Clone NameMSMg01-373N05
Chromosome3 (Build37)
Map Location 118,130,086 - 118,130,596
singlet/doubletsinglet
Overlap genenone
Upstream gene4833424O15Rik, EG668759, Snx7, LOC100043260
Downstream geneDpyd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-373N05.T7 (MSMg01no373_n05.b1)MSMg01-373N05.TJ (MSMg01no373_n05.g1)
ACCAG479764AG479765
length730738
length of high quality
(start - end)
524 (42 - 565)511 (59 - 569)
definitionCHROMAT_FILE: MSMg01no373_n05.b1 PHD_FILE: MSMg01no373_n05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:52 2005CHROMAT_FILE: MSMg01no373_n05.g1 PHD_FILE: MSMg01no373_n05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTCCTATATCGAGAGGATCCGCGGAATTCCAATAGTTCGAGCTCAAGGG
AGCTGGTCAAATCACATCCATGGTCAAAAGCATAGATGGAATGAGTGCAC
CCAGGCATGAATTCAGCTAGCTTTCTCTATTCATATATAGTTCCGGATTG
TATGCATGTGACACCCAATTGGTCAGATATTCCTACTTCCATCACTGTAA
TAAAAATAATCCTCCATAGATGGGCCTACAGGCAAACCTCATCTAGACAA
CCTCTCATTGAGATTCACTTTCTAGGAGATTCCAGATTTGCCAAGTTGAC
TCTTAAAATTAACCATCACAGCATATTTCAGAGGGCAATGAATGTGTGAA
TGTAAATTGTATTTTTTAAATTATTGTTATTTTTCTTTTTTTTCTCTGTC
ACTGTACTTCTTTTTTTTCCATTTTATTGGTTATTTTATTTATTTACATT
TCAAATGTTATTCCCCTTCCAAGTTTCCCATCCACAAGCCCCGTATCTCC
ACCTCCCTCCCACCTGCCTCTATAAGGGCACTCTCCCACACACCCACCCA
CCCACTCCTGCCTCAGTGCCCTAGAGTTTTCCTATCCTGGGTCATCAACC
CTCCACAGGACCAAGGGGCTCCCAGGGATACCAGAAAAGGCATCCTTTGC
TTCTTATCCCGGTAAAAAAATGGGGACCCCCTGTGGACCCTTTGGTTGGG
GGGAAAGATCCTGGAAATTGTGAGGGGAAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTCCTCCCCCGGAGTCTTCTAGAATGTTTATAGGGGATAGGAA
GTGTAGATCATGCTTCGCTCTTAAATCATGCTAAAAACAAAACAAATATC
AAACAGGGTTGCATACTTTTCTTTGTTCAGTTCCGTCTTTAGAATATGTT
GGAATTTTCGAAGGAGGCACTATTTTTATATAAAATAATATTTACCTATA
TAATTCATTAGTGCCACTCCATATAAAGAGGGGTCCTTGACAAGGTTGCT
GGACTACAGATTGTAGAAACACCAGTTCCTGAAAGTGACATGTTTAGTTG
ACTTTAAACTGTGTTTAAAGAAATGAAAACCCATGTTCCTTTTCAAAACG
ATATGTCACATATATGATATGTTTATCACACATGATTGAGTTGTACAAAC
ACATATCGCTATTAAGTCTCAAATGTTGACTACCACAATTTAAATGTTTA
GCCACGGTTTTCTGCTAGAGCCTATAAAAGGAAAGTGGTGTCCCCTGACA
AGAGAGTAGGGATTCTTAGNTTTTCCTGTCCTAGACAAAGGAAATTGCCC
TACAGTGCTATGGAAAACAATCCCATGGAAGTTTACCAGTACTGGTCAGT
TTTCAAAGAACTACCACCTTTCTAAAATAGATTTCCAGAATTCCTGGCAT
TTATATTACTCCCGGGAAGGGGGGGTTTATTATTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no373_n05.g1 MSMg01no373_n05.g1 CHROMAT_FILE:
MSMg01no373_n05.g1 PHD_FILE: MSMg01no373_n05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:52 2005
         (511 letters)



>mm_chr3_118129700_118130610
          Length = 911

 Score =  957 bits (495), Expect = 0.0
 Identities = 507/511 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcctcccccggagtcttctagaatgtttataggggataggaagtgtagatcatgcttcgc 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 897 tcctccccccgagtcttctagaatgtttataggggataggaagtgtagaccatgcttcgc 838

                                                                       
Query: 61  tcttaaatcatgctaaaaacaaaacaaatatcaaacagggttgcatacttttctttgttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 tcttaaatcatgctaaaaacaaaacaaatatcaaacagggttgcatacttttctttgttc 778

                                                                       
Query: 121 agttccgtctttagaatatgttggaattttcgaaggaggcactatttttatataaaataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 agttccgtctttagaatatgttggaattttcgaaggaggcactatttttatataaaataa 718

                                                                       
Query: 181 tatttacctatataattcattagtgccactccatataaagaggggtccttgacaaggttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 tatttacctatataattcattagtgccactccatataaagaggggtccttgacaaggttg 658

                                                                       
Query: 241 ctggactacagattgtagaaacaccagttcctgaaagtgacatgtttagttgactttaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 ctggactacagattgtagaaacaccagttcctgaaagtgacatgtttagttgactttaaa 598

                                                                       
Query: 301 ctgtgtttaaagaaatgaaaacccatgttccttttcaaaacgatatgtcacatatatgat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 ctgtgtttaaagaaatgaaaacccatgttccttttcaaaacgatatgtcacatatatgat 538

                                                                       
Query: 361 atgtttatcacacatgattgagttgtacaaacacatatcgctattaagtctcaaatgttg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 atgtttatcacacatgattgagttgtacaaacacatatcgctattaagtctcaaatgttg 478

                                                                       
Query: 421 actaccacaatttaaatgtttagccacggttttctgctagagcctataaaaggaaagtgg 480
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 actaccacgatttaaatgtttagccacggttttctgctagagcctataaaaggaaagtgg 418

                                          
Query: 481 tgtcccctgacaagagagtagggattcttag 511
           ||| |||||||||||||||||||||||||||
Sbjct: 417 tgttccctgacaagagagtagggattcttag 387


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space:   451401
Effective search space used:   451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)