XXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAATTCACCTC
CCTATGCGCCATGGAAAAAGTCATACTTGGTTGCATTCTCTTGCCATCCT
AGCACTGGAGAGGTAAACACAAGAGAATTCCTGAGTGTTGTGGCCAGCCT
GTATATCCAAATGCATAGGCTCTAACTCAAAAAAAGAGGTAGGTGAAGAG
ACTGGAGAAGAAAATATCTGACATTGACCTGTGACCTCCACATAGACACA
CATGTGAGCGAACACACACACACACACACATTTGAGCATACATACCTGTG
CACACACATATGAGCACACAGACACACATCGTGAGTTCCCTTTGCTATAC
ACCTCCTTTATGCTTCCAAAAACACAAGACTGTGGAAACATACCGTTCCT
CATGATGTGAGACTTCTGATTGACAGATGATTGAACTCTCTAACTGTAAG
TAGCTTCTTGTATTATAGAGTGGGATGAGTGTCTTTCTTGAAGTTAGAAA
ACATAGATGTTTTCCATACTGCCAGTAGCATTTTTTCATATTTTGAAGAA
NAAAAAAAAATTTGGAAAAAAAAAAAAAGAGTTTTGCCCAGTTCTAAAGG
AGAATAGGAAACCATGTCCTGTTTCAAAATAGTGTAAGTTCTGATACACG
CCTTAACAAATCTATGTGTGTGTGTGGCTTCCACAGGCAAAAACAATCCA
AAATGCTATAAGAAACAGCCCNCCTCTTTGATCATCTAAATAACAG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCACAATACAACCCACAAAACATA
TGAAGCTTAAGTAGAAGGAAGAACAAAGTGTGGATGCTTCCCTCCTACAT
AGAAGGGGGAACAAAATTATCACAGAAGGTAGAGGGAGGGAGGGACCTGG
GAGGGAGAAAGGATGCAGAGTGGAAAGAGGGAAAATAATCAGGTATGGAA
AGGGACAGGGGAGAAGTACAGAGGGTCAGGAAATTGAATAGAAATATGTA
GCAGTGGGGGGTGGGGAACTAGGGGTATTTTCTAGAAAATCCTAGACACC
AGGGAACTGAGAGGCTCCCAGACCCAACATTCACCGAAAGACCCAACAAT
GGGGAGATAAAACCTGTAGAGACTAGCTTCAGTAGATAGTCATGACTGCT
AGTTAAGGGATGGAAACACCCACTCATCTCAAATTTTTTAACCCAGAATT
GTTCTTGTCTAAAGGAAAGACAGGAACAAAAAATGGAACAGAGACTGAAG
AAAAGGCCATCCAGAGACTTCCCTGACTAGGGATCCATTACATCTTTAGA
CACTATGCCCAGACTCTTGCTGATGTCAAGAAACACTTGCTGACAGAATT
CTGACTAATACAGATGCTGATACTCACAGCCAGATATTGAACTGAGCCCT
TGGGACCCCATGGAAGAGCTAAGGTCGGGGCTGAAGGAGGGG

Query= MSMg01no373_o21.b1 MSMg01no373_o21.b1 CHROMAT_FILE:
MSMg01no373_o21.b1 PHD_FILE: MSMg01no373_o21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:00 2005
         (548 letters)



>mm_chr3_80921475_80922422
          Length = 948

 Score =  777 bits (402), Expect = 0.0
 Identities = 443/458 (96%), Gaps = 9/458 (1%)
 Strand = Plus / Minus

                                                                       
Query: 96  ttcctgagtgttgtggccagcctgtatatccaaatgcataggctctaactcaaaaaaaga 155
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 948 ttcctgagtgttgtggccagcctgtatatccaaatgcataggctctaactcaaaaaaaga 889

                                                                       
Query: 156 ggtaggtgaagagactggagaagaaaatatctgacattgacctgtgacctccacatagac 215
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 888 ggtaggtgaagagactggagaggaaaatatctgacattgacctgtgacctccacatagac 829

                                                                       
Query: 216 acacatgtgagcga--acacacacacacacacacatttgagcatacatacctgtgcacac 273
           ||||||||||| ||  |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 828 acacatgtgagtgaacacacacacacacacacacatttgagcatacatacatgtgcacac 769

                                                                       
Query: 274 acatatgagcacacagacacacatcgtgagttccctttgctatacacctcctttatgctt 333
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 acatatgagcacacagacacacatcgtgagttccctttgctatacacctcctttatgctt 709

                                                                       
Query: 334 ccaaaaacacaagactgtggaaacataccgttcctcatgatgt-gagacttctgattgac 392
           |||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 708 ccaataacacaagactgtggaaacataccgttcctcatgat-tcgagacttctgattgac 650

                                                                       
Query: 393 agatgattgaactctctaactgtaagtagcttcttgtattatagagtgggatgagtgtct 452
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 649 agatgattgaactctctaactctaagtagcttcttgtattatagagtgggatgagtgtct 590

                                                                       
Query: 453 ttcttgaagttagaaaacatagatgttttccatactgccagtagcattttttcatatttt 512
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 ttcttgaagttagaaaacatagatgttttccatactgccagtagcattttttcatatttt 530

                                                 
Query: 513 gaagaanaaa-aaa-aaatttggaaaaaaaaaaaaaga 548
            ||||| ||| ||| |||||||  ||||||||||||||
Sbjct: 529 aaagaa-aaacaaacaaatttg--aaaaaaaaaaaaga 495


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space:   504644
Effective search space used:   504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)