Query= MSMg01no374_a05.b1 MSMg01no374_a05.b1 CHROMAT_FILE:
MSMg01no374_a05.b1 PHD_FILE: MSMg01no374_a05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:06 2005
(436 letters)
>mm_chr3_78615593_78616427
Length = 835
Score = 745 bits (385), Expect = 0.0
Identities = 421/433 (97%), Gaps = 1/433 (0%)
Strand = Plus / Plus
Query: 4 ggaattctccttgtctggccccttggactccacattaggttttttagatgcttgacttgc 63
||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 204 ggaattctccttgtctgttcccttggactccactttagggtttttagatgcttgacttgc 263
Query: 64 agcacacttgtatattactatgggaaccggattcagcttgaaatataagataatattcaa 123
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 264 agcacacttgtatattactatgggaaccagattcagcttgaaatataagataatatccaa 323
Query: 124 ccctgtatgcagaaacccttcctgggctgcagcgaagccatgatcagcctgttacggcca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ccctgtatgcagaaacccttcctgggctgcagcgaagccatgatcagcctgttacggcca 383
Query: 184 ggccattagaggtgattttcagagttctctggatcagggggaagggaggttgcatggaag 243
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 384 ggccattagaggtgattttcagagttctctggatcagggg-aagggaggttgcatggaag 442
Query: 244 aaaaagtattccgcaccccagagtctcttgcttctgtgctgtgcttcatcattgatccta 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aaaaagtattccgcaccccagagtctcttgcttctgtgctgtgcttcatcattgatccta 502
Query: 304 tgtatttccatgttaatgtatttaagaaaaatgccatcgcaatttagactcaagaaattt 363
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 503 tgtatttccatgttaatgtatttaagaaaaatgccattgcaatttagactcaagaaattt 562
Query: 364 ctgattcaattgcactctaaaaattttaaattcagaccttctttaaagatctagaacaaa 423
||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 563 ctgattcaattgcactctaaaaattaaaaatccagaccttctttaaagatctagaacaaa 622
Query: 424 agtaagtcatcag 436
|| ||||||||||
Sbjct: 623 agaaagtcatcag 635
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 835
Length adjustment: 9
Effective length of query: 427
Effective length of database: 826
Effective search space: 352702
Effective search space used: 352702
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no374_a05.g1 MSMg01no374_a05.g1 CHROMAT_FILE:
MSMg01no374_a05.g1 PHD_FILE: MSMg01no374_a05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:06 2005
(468 letters)
>mm_chr3_78764926_78765795
Length = 870
Score = 822 bits (425), Expect = 0.0
Identities = 458/470 (97%), Gaps = 2/470 (0%)
Strand = Plus / Minus
Query: 1 tctaggacaacactcaggtgctatacatcaagaaatgtatgtaggaaatatggagtcatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 tctaggacaacactcaggtgctatacatcaagaaatgtatgtaggaaatatggagtcatc 611
Query: 61 ttggaaggctgcatcacacaagggattttt--cccccaagggtaaaagtcttttgcattt 118
|||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 610 ttggaaggttgcatcacacaagggattttttccccccaagggtaaaagtcttttgcattt 551
Query: 119 cctctctgcagaattctctttaatattctttggcttctttccacatatttcgaaaaatag 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 cctctctgcagaattctctttaatattctttggcttctttccacatatttcgaaaaatag 491
Query: 179 caagatgcgatactgcacacatgagtgcatgaggtacgaagcgaagggataaatcttggg 238
|||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 490 caagatacgatactgcacacatgagtgcatgaggaacgaagcgaagggatagatcttggg 431
Query: 239 ctcgtttcagttttcagagaacgaccctgccttttcccatcgagaagtagctgtgagggg 298
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 430 ctcgtttcagctttcagagaacaaccctgccttttcccatcgagaagtagctgtgagggg 371
Query: 299 ctgcagtgttgtggcatgccccatttgctctctggacagtctttgattccaggctccttc 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ctgcagtgttgtggcatgccccatttgctctctggacagtctttgattccaggctccttc 311
Query: 359 ccttgttgctcaagaccttaaggggtctaagaactgtttttccttactaggaatcaaatt 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 310 ccttgttgctcaagaccttaaggggtctaagaactgtttttccttactaggaatcaagtt 251
Query: 419 gaggttttcatgagtgctggacattccttgccagntagcttctcccctgt 468
||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 250 gaggttttcatgagtgctggatgttccttgccagttagcttctcccctgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 870
Length adjustment: 10
Effective length of query: 458
Effective length of database: 860
Effective search space: 393880
Effective search space used: 393880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
