BAC Information

Click to search

BAC

Clone NameMSMg01-374E12
Chromosome3 (Build37)
Map Location 14,062,057 - 14,062,334
singlet/doubletsinglet
Overlap gene0710005M24Rik
Upstream geneLOC100039823, LOC100039861, LOC100041679, LOC100041667, LOC100039882
Downstream geneEG622229, LOC668062, Slc7a12, LOC668068, Lrrcc1, E2f5, 1810022K09Rik, LOC100039929, Car13, EG545507, Car1, LOC100041785, Car3, Car2, EG634323
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-374E12.T7 (MSMg01no374_e12.b1)MSMg01-374E12.TJ (MSMg01no374_e12.g1)
ACCAG480114AG480115
length790786
length of high quality
(start - end)		544 (45 - 588)322 (77 - 398)
definitionCHROMAT_FILE: MSMg01no374_e12.b1 PHD_FILE: MSMg01no374_e12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:28 2005CHROMAT_FILE: MSMg01no374_e12.g1 PHD_FILE: MSMg01no374_e12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGCTTTATCCCTTCTGGTCCTGGGCTTTTTGTTTGTTTGTTTGTTT
GTTTGTTTGTTTGTTTGTTTTGGAGACTAATAATTACTGCTTTTATTTCT
TTAGCTGAAATAGACCTGTTTAGATAATTAATCTGATACTGATTTAACTT
TGGTACCTGGTATTTGTCTAAGAAATTTTCCATTTCATTCTGGTTTTCCA
GTTTTGTTGAGGTTAGCATTTGTAGTAGGACCTGATCATGTTTTGTATTT
TCTCAGGTTGTGTTTTATGTCTCTTTTTTCTTTTCTAATTTTTAAAATTA
GGATACTGTCCCTGTGGCCTTAGTTAGTCTGGCTAAGGGTTAATCTATCC
TGTTGATTTTCTCAAAGAGCTAGCTCCTGTTTTGGTTGATTCTTTGAATA
GTTCTTTTTGTTTCTGCTTGGTTGATTTCAGCCCTGAGTTGGATTATTTC
CTGTAGTCTACTCCTCTTGTGTGATTTTGCTTCCTTTTGTTCTAGAGTTT
ATAGGTGTGCTGTCCGGCTGCTAGTGTATGCTCTCTCTAGTTCCCTTTTA
GTGTTACTCAGAACTACGTGTTTTCCCTCTTAAGACTGCCTTTCCTTGTG
TCCCATTAACTTTGGCCAATCTGCGGGTTCCTTTTTCCTCCCCCTCCAAA
AAGTCCCTTTCTTTTCCCTCTTTCTTTCCTCTTCGTAACCATTTACCCCT
CTATGCGCATGTGTCCTCTCTTCCACATATTCTCTTTATG

GAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTAGAGTATTTATTACTAGTGCT
CTTTTTTTCTGAACAACTAGCAAGGAGACCTTCCCAGGCCTGGCTAGCTA
ACTCCTTGGGAACTAGAGGGGAAAGAAAGAGTCACTCACATATACACATA
CACATACACATACACATACACATACACATACACATACACATACACATACA
CATACACATACACATACATACACATACTCATACACATACATATACTCATA
CACATACATATACATATATATCTACTTCTCTACGTAAAGTGGAAAATGGC
TACAACACTACATTTGAATGGATGGATGGATGGATGGATGGATGGATGNA
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NTNNNNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNTNNNNNTNNNTTNNNTNNTTTTNTTTNNNNNTTTTTTTTTTTTNTTT
TTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTNNN
TNTNTNTTTTTTTTTTTTTTTTTTTNTTTNNTTTTNNTTTTTTTTTNTTT
NTTNTNNTTTTTTNTTTTNNTTTTNTTTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no374_e12.g1 MSMg01no374_e12.g1 CHROMAT_FILE:
MSMg01no374_e12.g1 PHD_FILE: MSMg01no374_e12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:28 2005
         (322 letters)



>mm_chr3_14061857_14062577
          Length = 721

 Score =  391 bits (202), Expect = e-113
 Identities = 272/322 (84%), Gaps = 44/322 (13%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtagagtatttattactagtgctctttttttctgaacaactagcaaggagaccttccca 60
           ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 201 agtagagtatttattactagtgctcttgttt-ctgaacaactagcaaggagaccttccca 259

                                                                       
Query: 61  ggcctggctagctaactccttgggaactagaggggaaagaaagagtcactcacatataca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ggcctggctagctaactccttgggaactagaggggaaagaaagagtcactcacatataca 319

                                                                       
Query: 121 catacacatacacatacacatacacatacacatacacatacacatacacatacacataca 180
           ||||||  ||                                        ||||||||||
Sbjct: 320 cataca--ta----------------------------------------tacacataca 337

                                                                       
Query: 181 catacacatacatacacatactcatacacatacatatactcatacacatacatatacata 240
           |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 338 catacacatacatatacatactcatacacatacatatactcatacacatacatatacaca 397

                                                                       
Query: 241 tatatctacttctctacgtaaagtggaaaatggctacaacactacatttgaatggatgga 300
           ||||| |||  | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 tatatgtaca-cactacgtaaagtggaaaatggctacaacactacatttgaatggatgga 456

                                 
Query: 301 tggatggatggatggatggatg 322
           ||||||||||||||||||||||
Sbjct: 457 tggatggatggatggatggatg 478


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 57
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 721
Length adjustment: 9
Effective length of query: 313
Effective length of database: 712
Effective search space:   222856
Effective search space used:   222856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |