Query= MSMg01no374_e16.b1 MSMg01no374_e16.b1 CHROMAT_FILE:
MSMg01no374_e16.b1 PHD_FILE: MSMg01no374_e16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:29 2005
(524 letters)
>mm_chr3_143875935_143876857
Length = 923
Score = 839 bits (434), Expect = 0.0
Identities = 440/442 (99%), Gaps = 1/442 (0%)
Strand = Plus / Minus
Query: 4 ggaattccatttttccaccacattcctgttattaggccctttgaatttttatctagatgt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaattccatttttccaccacattcctgttattaggccctttgaatttttatctagatgt 382
Query: 64 tattgcaccaataaggacagctggttatggcacctagcatctatggatagagcctctcac 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tattgcaccaataaggacagctggttatggcacctagcatctatggatagagcctctcac 322
Query: 124 tatacttgctaggaaaaaaaatgtactgatgccagtgtgaggcttatcaccttttctaga 183
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 tatacttgctagg-aaaaaaatgtattgatgccagtgtgaggcttatcaccttttctaga 263
Query: 184 atagttgataccagtaggggtatcaatagttgataccaggaaagtgtggctctgctgcta 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 atagttgataccagtaggggtatcaatagttgataccaggaaagtgtggctctgctgcta 203
Query: 244 agttcctgttccccaattggttcttgattgttcaataaagatgccaggatccaattgctg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 agttcctgttccccaattggttcttgattgttcaataaagatgccaggatccaattgctg 143
Query: 304 ggcagaagaaaagaggtgggacttcccggtccccaaaggcaggctaagagacacatggga 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 ggcagaagaaaagaggtgggacttcccggtccccaaaggcaggctaagagacacatggga 83
Query: 364 ggaataaaagcttcgcagagcttaggggaagaaggggccgtcagccatgtgtgatctccg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82 ggaataaaagcttcgcagagcttaggggaagaaggggccgtcagccatgtgtgatctccg 23
Query: 424 gtggagtctccatcggccacct 445
||||||||||||||||||||||
Sbjct: 22 gtggagtctccatcggccacct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 923
Length adjustment: 10
Effective length of query: 514
Effective length of database: 913
Effective search space: 469282
Effective search space used: 469282
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no374_e16.g1 MSMg01no374_e16.g1 CHROMAT_FILE:
MSMg01no374_e16.g1 PHD_FILE: MSMg01no374_e16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:29 2005
(451 letters)
>mm_chr3_143723271_143724122
Length = 852
Score = 804 bits (416), Expect = 0.0
Identities = 443/452 (98%), Gaps = 1/452 (0%)
Strand = Plus / Plus
Query: 1 tgtctcattgtaagatggtcctgtttagtgccgcaggcacatgtggacatccacacacac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtctcattgtaagatggtcctgtttagtgccgcaggcacatgtggacatccacacacac 260
Query: 61 acaatcatcaaggggagcagctgtcctgacgagagatcggactgaacaatgagctggttt 120
|||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 261 acaatcatcaaggggaacagctgtcctgacgagagatcagactgaacaatgagttggttt 320
Query: 121 aaaactctgatcctaagaacttttgcgattctgcttcc-gttgcctgactgaagctagag 179
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 aaaactctgatcctaagaacttttgcgattctgcttcccgttgcctgactgaagctagag 380
Query: 180 cacccatctagccttcctgatctctctcgggtgagcaacaaggctgggaatcacagcctt 239
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 cacccatctagccttcctgatctctctcgggtgagcaacgaggctgggaatcacagcctt 440
Query: 240 agcctcctgggaccactctgcaggggcagtactgtcaccatgctcgtagaccagaggacg 299
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 441 agcctcctgggaccattctgcaggggcagcactgtcaccatgctcgtagaccagaggacg 500
Query: 300 gccaaacctctgtgcaatggaacaaatatatgggtcaggcaaaggtgtaatacaagctat 359
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gccaatcctctgtgcaatggaacaaatatatgggtcaggcaaaggtgtaatacaagctat 560
Query: 360 ttgacctttgttgccatatggtcatttgacataatatattgtaaaacatttataaataat 419
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgacctttgttgccatatagtcatttgacataatatattgtaaaacatttataaataat 620
Query: 420 gtgtgggaaaagagaagctgatgatatcatgg 451
||||||||||||||||||||||||||||||||
Sbjct: 621 gtgtgggaaaagagaagctgatgatatcatgg 652
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 852
Length adjustment: 10
Effective length of query: 441
Effective length of database: 842
Effective search space: 371322
Effective search space used: 371322
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
