Query= MSMg01no374_g07.b1 MSMg01no374_g07.b1 CHROMAT_FILE:
MSMg01no374_g07.b1 PHD_FILE: MSMg01no374_g07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:37 2005
(593 letters)
>mm_chr3_124023956_124024948
Length = 993
Score = 1104 bits (571), Expect = 0.0
Identities = 585/593 (98%), Gaps = 7/593 (1%)
Strand = Plus / Plus
Query: 5 gaattcatggtgttcc----ccacgcggatatggtctcctgcgtgggcatgttcttcgtg 60
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcatggtg---cagaaccacgcggatatggtctcctgcgtgggcatgttcttcgtg 260
Query: 61 ctggggcttatgttcgagggcacctccgagatgtcgatcgcgttcctcactctgcagcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctggggcttatgttcgagggcacctccgagatgtcgatcgcgttcctcactctgcagcat 320
Query: 121 ggagtcgttgtcccagcggaagggctgccctccgggtccaggaccctgtaccattatggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggagtcgttgtcccagcggaagggctgccctccgggtccaggaccctgtaccattatggg 380
Query: 181 gtcaaagatctggccacagtgttcttctacatgctggtggccatcatcatccacgccacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcaaagatctggccacagtgttcttctacatgctggtggccatcatcatccacgccacc 440
Query: 241 attcaggagtacgtgctagataagctcagcaggagactgctgctcaccaaaggcaaacaa 300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 441 attcaggagtacgtgctagataagctcagcaggagactgcagctcaccaaaggcaaacaa 500
Query: 301 aacaaactgaatgaggccgggcagctgagtgtgttctatatagtgtccgggatctggggc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacaaactgaatgaggccgggcagctgagtgtgttctatatagtgtccgggatctggggc 560
Query: 361 atgatcattctggcctctgagaactgcctgtcagaccctacactcttgtggaagtctcag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgatcattctggcctctgagaactgcctgtcagaccctacactcttgtggaagtctcag 620
Query: 421 ccccacaacatgatgacatttcagatgaaatttttctacatttcacagttggcttactgg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccccacaacatgatgacatttcagatgaaatttttctacatttcacagttggcttactgg 680
Query: 481 tttcatagctttccggagctttacttccagaaagtcaggaagcaagatatcccgggtcag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tttcatagctttccggagctttacttccagaaagtcaggaagcaagatatcccgggtcag 740
Query: 541 ctcatctacattggcctccacctcttccacattggaggggcctatctcttgta 593
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctcatctacattggcctccacctcttccacattggaggggcctatctcttgta 793
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 993
Length adjustment: 10
Effective length of query: 583
Effective length of database: 983
Effective search space: 573089
Effective search space used: 573089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no374_g07.g1 MSMg01no374_g07.g1 CHROMAT_FILE:
MSMg01no374_g07.g1 PHD_FILE: MSMg01no374_g07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:37 2005
(461 letters)
>mm_chr3_124071268_124072128
Length = 861
Score = 876 bits (453), Expect = 0.0
Identities = 456/457 (99%)
Strand = Plus / Minus
Query: 1 tttggctctcttcctggacctgctgagttttggatttattatatcagtgacacctatgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 tttggctctcttcctggacctgctgagttttggatttattatatcagtgacacctatgtg 598
Query: 61 atttctgtttcacttgacctattcatgcgttgatggtatcaggatgtgagaaagtttagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 atttctgtttcacttgacctattcatgcgttgatggtatcaggatgtgagaaagtttagt 538
Query: 121 tctattctgtctatttctgtcttttatataagcactttaatctcattgttctgatagtca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 tctattctgtctatttctgtcttttatataagcactttaatctcattgttctgatagtca 478
Query: 181 caaatatggttactccattgaccaattctgatgaggtacgtgactttaccttgctgtaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 caaatatggttactccattgaccaattctgatgaggtacgtgactttaccttgctgtaat 418
Query: 241 agctatcattgctgagtgctccttttttgtgatgttctaaactgtgggaatttatcttct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 agctatcattgctgagtgctccttttttgtgatgttctaaactgtgggaatttatcttct 358
Query: 301 cccctctgatggttgcagatgtttctgttgctttctcttttttccctcatttcttcagtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 cccctctgatggttgcagatgtttctgttgctttctcttttttccctcatttcttcagtt 298
Query: 361 tacaagttacaggattcttagcattacttcctaaacaaccacagtagttcagtggaagca 420
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 297 tacaagttacaggattcttagcattacttcctaaacaaccgcagtagttcagtggaagca 238
Query: 421 atcaggtgatgccatcctaataatagatgacatagaa 457
|||||||||||||||||||||||||||||||||||||
Sbjct: 237 atcaggtgatgccatcctaataatagatgacatagaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space: 383801
Effective search space used: 383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
