Query= MSMg01no374_k20.b1 MSMg01no374_k20.b1 CHROMAT_FILE:
MSMg01no374_k20.b1 PHD_FILE: MSMg01no374_k20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:59 2005
(352 letters)
>mm_chr3_125124254_125125000
Length = 747
Score = 516 bits (267), Expect = e-151
Identities = 302/319 (94%), Gaps = 11/319 (3%)
Strand = Plus / Minus
Query: 5 gaattcagttatcagttactgctcatttttttttttgcagatcagcagcacagtagacta 64
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 309 gaattcagttatcagttactgctca-----ttttttgcagatcagcagcacagtacacta 255
Query: 65 atcctatataatgggcattcagtattgcaaaagaacaatggaaacaaata-acttcaaag 123
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 254 atcctatataatggacattcagtattgcaaaagaacaatggaaacaaatacacttcgaag 195
Query: 124 ctcactggacagatgcaacaattgtattagtgtctactgaaaggacagacacaaagatca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 ctcactggacagatgcaacaattgtattagtgtctactgaaaggacagacacaaagatca 135
Query: 184 atagatgagaatagtgagttcctaaacaaagtctctgtggaaaattattctttgacaagg 243
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 134 atagacgagaatagtgagttcctaaacaaagtctctgtggaaaattattccttgacaagg 75
Query: 244 gaacaaaagcagatctgtggagcaagaacagtcttttcaaggagtggtgctagaagcagg 303
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 74 gaacaaaagcagatctgtggagca-----agtcttttcaaggagtggtgctagaagcagg 20
Query: 304 agtgggtgagctagtgagc 322
|||||||| ||||||||||
Sbjct: 19 agtgggtgggctagtgagc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 747
Length adjustment: 9
Effective length of query: 343
Effective length of database: 738
Effective search space: 253134
Effective search space used: 253134
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no374_k20.g1 MSMg01no374_k20.g1 CHROMAT_FILE:
MSMg01no374_k20.g1 PHD_FILE: MSMg01no374_k20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:59 2005
(451 letters)
>mm_chr3_124996412_124997262
Length = 851
Score = 835 bits (432), Expect = 0.0
Identities = 447/452 (98%), Gaps = 1/452 (0%)
Strand = Plus / Plus
Query: 1 tgcattagatgggttccttacatgatgagtagggaagtggcctaactggaggccatcatt 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 tgcattagatgggttccttacatgatgagtagggaagtggcctaactggaggccgtcatt 260
Query: 61 tgtggtatgccatatgtgaacatgtcttgccctggtccttttctgaattcttttgatctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtggtatgccatatgtgaacatgtcttgccctggtccttttctgaattcttttgatctg 320
Query: 121 attccaggtttacaggatgggaatcctgagtcctgcagttcctctttcactacaaggtac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attccaggtttacaggatgggaatcctgagtcctgcagttcctctttcactacaaggtac 380
Query: 181 tgacaattgcgaaaccacaggtgcaaaggagttttctcttccttacattgttttctacag 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgacacttgcgaaaccacaggtgcaaaggagttttctcttccttacattgttttctacag 440
Query: 241 atttttggccacaataataatactgctaattaacccatgaacttggacaaaaataatgat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atttttggccacaataataatactgctaattaacccatgaacttggacaaaaataatgat 500
Query: 301 tgaaaacaggagtggaaggaaacctcaagggaaacaatccaaagcagatgttgtaaaata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgaaaacaggagtggaaggaaacctcaagggaaacaatccaaagcagatgttgtaaaata 560
Query: 361 atttaaataaatatgaga-gaaatgagaaagatataagcaacatgcttttgaaataccta 419
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atttaaataaatatgaaaagaaatgagaaagatataagcaacatgcttttgaaataccta 620
Query: 420 gtaacaagtgactgaaaatttttcctaggtat 451
|||||||||||||||||||||| |||||||||
Sbjct: 621 gtaacaagtgactgaaaattttccctaggtat 652
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 851
Length adjustment: 10
Effective length of query: 441
Effective length of database: 841
Effective search space: 370881
Effective search space used: 370881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
