Query= MSMg01no374_o12.b1 MSMg01no374_o12.b1 CHROMAT_FILE:
MSMg01no374_o12.b1 PHD_FILE: MSMg01no374_o12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:18 2005
(611 letters)
>mm_chr3_132556350_132557360
Length = 1011
Score = 735 bits (380), Expect = 0.0
Identities = 593/752 (78%), Gaps = 146/752 (19%)
Strand = Plus / Plus
Query: 4 ggaattcctgaccttacgccagggagtcctcactcccttctcctgccagaaatttaatta 63
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 ggaattcctgaccagaggccagggagtcctcactcccttctcctgccagaaatttaatta 121
Query: 64 atactttatttttataagacaaggaataaaagacatagcctaccacaaaactgatgacat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 atactttatttttataagacaaggaataaaagacatagcctaccacaaaactgatgacat 181
Query: 124 tcagacaggttttccccctgtagttatgttactattgctagccaggacttctaaaactga 183
||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 182 tcagacaggttttcctcctgtagttatgttactattgctagccaggacttttaacactga 241
Query: 184 caatcttggactatttgcaactgtatttagctcactacatctggactgt----ccg---- 235
| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 242 cgatcttggactatttgcaactgtatttagctcactacatctggactgttcccccgcttt 301
Query: 236 tgt--c------c----c-------cc--cc-----ccc----c---cc-cacacacaca 261
||| | | | || || | | | || ||||||||||
Sbjct: 302 tgtttcaaaagtcaaaacagaagtgccttcctatttcacaggacataccacacacacaca 361
Query: 262 caggc------------------------------------------------tgtcagg 273
|| | |||||||
Sbjct: 362 ca--cacacacacacacacacacacacacacacacacacacacacacatacactgtcagg 419
Query: 274 tatgacagaatccaagctaaggcagaagatggatgtggataggctggtccctggggctgc 333
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 tatgacggaatccaagctaaggcagaagatggatgtggataggctggtccctggggctgc 479
Query: 334 tgaatgactgaca----------------------------------------------- 346
|||||||||||||
Sbjct: 480 tgaatgactgacagcaattacatccaatgacaactttcctttcctcatttccgcctctta 539
Query: 347 -------ccttccttcttacctacaacattctaggtaaatgtgcttcatttcccatgaca 399
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 gagagcaccttccttcttacctacaacattctaggtaaatgtgcttcatttcccatgaca 599
Query: 400 taaaaacaagagaacacaattgtgtgtttgttctcctcttcagtaacataaatcactctg 459
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 taaaaatatgagaacacaattgtgtgtttgttctcctcttcagtaacataaatcactctg 659
Query: 460 aaatggaaaagctcaacccctgtggtgtagagtctgagggcattatgacagttctgccac 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 aaatggaaaagctcaacccctgtggtgtagagtctgagggcattatgacagttctgccac 719
Query: 520 cccacccccattaaggcctgtccaatggcatttgcttgtctcctgacgtgcctgggtgtt 579
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct: 720 cccacccccattaaggcctgtccgatggcatttgcttgtctcctgacgtgcctgggtgct 779
Query: 580 ctgacacaggaggctgttttatcaaggaagag 611
||||||||||||||||||||||||||||||||
Sbjct: 780 ctgacacaggaggctgttttatcaaggaagag 811
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space: 601601
Effective search space used: 601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no374_o12.g1 MSMg01no374_o12.g1 CHROMAT_FILE:
MSMg01no374_o12.g1 PHD_FILE: MSMg01no374_o12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:18 2005
(245 letters)
>mm_chr3_132749430_132750074
Length = 645
Score = 474 bits (245), Expect = e-138
Identities = 245/245 (100%)
Strand = Plus / Minus
Query: 1 actaagtaatgaaactgaagcatttctatttctttttacctatttattcctcttacaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 actaagtaatgaaactgaagcatttctatttctttttacctatttattcctcttacaaat 386
Query: 61 tcccaatcatgctgtcctagaagagagagatgcatgttctattggctgtgttcagctcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcccaatcatgctgtcctagaagagagagatgcatgttctattggctgtgttcagctcct 326
Query: 121 gacaacttatgcctttgtctactgcctggtcatgtcctctcggtgactgactgcagtatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gacaacttatgcctttgtctactgcctggtcatgtcctctcggtgactgactgcagtatg 266
Query: 181 gcatctggcagaatagaggaggaaaaaatgacaggtctgtgtgtgatgaaaatctaataa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcatctggcagaatagaggaggaaaaaatgacaggtctgtgtgtgatgaaaatctaataa 206
Query: 241 gggac 245
|||||
Sbjct: 205 gggac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space: 150096
Effective search space used: 150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
