Query= MSMg01no374_o19.b1 MSMg01no374_o19.b1 CHROMAT_FILE:
MSMg01no374_o19.b1 PHD_FILE: MSMg01no374_o19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:19 2005
(497 letters)
>mm_chr3_116182489_116183386
Length = 898
Score = 893 bits (462), Expect = 0.0
Identities = 486/494 (98%), Gaps = 1/494 (0%)
Strand = Plus / Minus
Query: 5 gaattcaagtaaagtaccgtgattggagtcacaggatgagaaacacaagtttgtgggccg 64
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 gaattcaagtaaaggacagtgattggagtcacaggatgagaaacacaagtttgtgggccg 639
Query: 65 gaattaactgtaatggtggggaagtctgttcccattttggccccctttgtcagtgtagta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 gaattaactgtaatggtggggaagtctgttcccattttggccccctttgtcagtgtagta 579
Query: 125 cattctggctgtagaagaaagagtactccatgtttcttgctgatcccccaaatagcacac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 cattctggctgtagaagaaagagtactccatgtttcttgctgatcccccaaatagcacac 519
Query: 185 atcctaaaggatgggctgtagcctttcagtcttgtcttcaactagcattacaactgtgag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 atcctaaaggatgggctgtagcctttcagtcttgtcttcaactagcattacaactgtgag 459
Query: 245 ccttcagtgagctgttttatagcccagtctcctctgatagatcctatgatacgtgacaag 304
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 458 ccttcagtgagctgttttatagcccagtctcctctgaaagatcctacgatacgtgacaag 399
Query: 305 accaacgagctatggccacggtataattgtgcagctg-aaaaaaaaatgggtttctcctc 363
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 398 accaaggagctatggccacggtataattgtgcagctgaaaaaaaaaatgggtttctcctc 339
Query: 364 agcagcagtattgggtaggacattcattaactccacaacactcccaattatttcttgctg 423
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct: 338 agcagcagtattgggtaggacatttattaactccacaacactctcaattatttcttgctg 279
Query: 424 aagaacaaatccctctgcctcaaatttgggagtttgagacaacaaatatttattacgtca 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 aagaacaaatccctctgcctcaaatttgggagtttgagacaacaaatatttattacgtca 219
Query: 484 caatctattacttc 497
||||||||||||||
Sbjct: 218 caatctattacttc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 898
Length adjustment: 10
Effective length of query: 487
Effective length of database: 888
Effective search space: 432456
Effective search space used: 432456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no374_o19.g1 MSMg01no374_o19.g1 CHROMAT_FILE:
MSMg01no374_o19.g1 PHD_FILE: MSMg01no374_o19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:20 2005
(425 letters)
>mm_chr3_116011622_116012446
Length = 825
Score = 638 bits (330), Expect = 0.0
Identities = 392/421 (93%), Gaps = 16/421 (3%)
Strand = Plus / Plus
Query: 1 atacaggaagaagacccaggaactgtcgctgtcagggagaa-gttctgccttgtcatgca 59
|||||||||||||||||||||||||| ||| ||||||| || |||||||||||||| |||
Sbjct: 201 atacaggaagaagacccaggaactgttgctctcaggga-aaggttctgccttgtcacgca 259
Query: 60 ttcagacaaattcttcaaatacatgaaacacacagacaggaggatttaataataaagacc 119
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 260 ttcagacaaattcttcaaatacatgaaacacacagacaggaggatttaagaataaagacc 319
Query: 120 gagctggacggcattggcccaagccttgaacaccaggaggcagaggaagttggagctctg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gagctggacggcattggcccaagccttgaacaccaggaggcagaggaagttggagctctg 379
Query: 180 tgagttcaaggccagcctgatctacagagcaagttccaggacagctagggctgcacagag 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgagttcaaggccagcctgatctacagagcaagttccaggacagctagggctgcacagag 439
Query: 240 aaaaactctgtcttgaaaaactaaaaatagatggatggatagatagatagatagatagat 299
||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 440 aaaaact--gtcttgaaaaacttaaaatggatggatggatagatagatagatagatagat 497
Query: 300 agatagatagatagatagatagatagatagcagaatccttgtcccttaanaaattcctac 359
|||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 498 agatagatagatagatag------------cagaatccttgtcccttaagaaattcctac 545
Query: 360 tttaataagggaaaagtgaataactaagatccagcatgttgaggccctgtgacccaggct 419
|||||||||||| ||||||| | || |||||||||| ||||||||||||||||| |||||
Sbjct: 546 tttaataagggagaagtgaacagctgagatccagcacgttgaggccctgtgaccgaggct 605
Query: 420 c 420
|
Sbjct: 606 c 606
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 825
Length adjustment: 9
Effective length of query: 416
Effective length of database: 816
Effective search space: 339456
Effective search space used: 339456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
