BAC Information

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BAC

Clone NameMSMg01-375B04
Chromosome3 (Build37)
Map Location 130,558,339 - 130,558,724
singlet/doubletsinglet
Overlap genenone
Upstream geneCfi, Pla2g12a, Casp6, Ccdc109b, Sec24b, EG668844, EG668845, Col25a1, Agxt2l1, 2310008M10Rik, Rpl34, LOC546811
Downstream geneLOC545568, Lef1, 6720418B01Rik, Hadh, Cyp2u1, Sgms2, LOC100043443, Papss1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-375B04.T7 (MSMg01no375_b04.b1)MSMg01-375B04.TJ (MSMg01no375_b04.g1)
ACCAG480716AG480717
length754758
length of high quality
(start - end)
511 (52 - 562)386 (83 - 468)
definitionCHROMAT_FILE: MSMg01no375_b04.b1 PHD_FILE: MSMg01no375_b04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:32 2005CHROMAT_FILE: MSMg01no375_b04.g1 PHD_FILE: MSMg01no375_b04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTATTTTTTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCAACTGAGGAATACCAAATGGCTGAGAAGCACCTAAAG
AAATGTTCAACATCCTTAGTAATCAGGGAAATGCAAATCAAAACAACCCT
GAGATTCCACCTCATAGCAGTCAGAATGGCTAAGATCAAAAATTCAGGTG
ACAGCAGATGCTGGTGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGT
TGGTGGGATTGCAAGCTGGTACAACTACTCTGGAAATCAGTCTGGCGGTA
ACTCTCAGAAAATTGGGCATAGTATTACCTAAGGACCCAGCTATATACAA
AAGATGCCTCAACATATAACAAGGACACATGCTCCATTATGTTCATAGCA
GGCTTATTTATAATAGCCAGAAGCTAGAAAGAACCCAGATGCCCTTCAAC
AGAGAAATGGATACAGAAAATGTGATACATTTACACAATGGAGTACTACT
CAGCTATAAAAAACAATGACTTCATGAAATTCTTAAGCAAATGGATGGAA
CTAGAAAATATTATCTTGAGTGATAAAATGTTATCCCCTTTCCCAGTTCC
CTTCCCTGCCCCCAGAAATCTCCCTATCCTACCCTCTCCCCTGCTTCAAT
GAAGGTGGTCCTCCCAACCCCCCCCCCTTGCCTCCCTGTCTTTGGAATTC
CCCTAACCGGTGTTATATAACCCCTTCCCGGTACAACGGTGTTTTCCTCC
CCTN
TTTTTCCGAAGCAATGGTCGGCCCTCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATCAGTTGGAGCGAATA
GAAATGCTCATCAGAGAGCCCCCACCACTAAAGGAGGGTGCTGTTGGAGA
CCAGCCACCCTCAGTCAACTCACCAGTTTGACCCAAGATGCAAGTGAATC
CAGCCCACCTTAGCCAGGCTTCCAAGAAGGTAGCAAATGACCTGCATTGG
AAGTCCAGGACTGGTAGAGAAGAGAGAGATTCATGAAGACGTCGGGATGG
AAATCATCCTTGACCAATCTCCTGTGTGCAGTGTTTGGAGTCCCGAGAAC
TTCAAATGCTGAAGAAGGGTGGCACACATCCCCAGGGATTCCATGCCTCT
CGGGAAGTGGAGAGAAGTAGGTTTTACAGTCCCAGCTCCCAGATGTACAC
ACAGTCTACCTACTGCACGGCAACGAAGGTGGTATTTGACATTTAGGCTA
ACTAAACTTTTTAATAAAAACTTTGCCGCATGAATGCTTATCCCATATTT
TCTATCATTCCCAGGATAGCTTATAATAGCCCTCACCGTTATAAAAATCT
AGTCCGCCTGTCTCATTCTGCGTATTTTTTTACCATGGCCCTCTGTAAGA
TTTACTCCAATTCGTTTTGCTTTATATTTTTGGCACATCTCCTAAAGAAC
ACTTATTCTCCCTCTTTCTTATTTCTCCCTTTTTTTTTGTTTCCTTCTTA
TTTTTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no375_b04.g1 MSMg01no375_b04.g1 CHROMAT_FILE:
MSMg01no375_b04.g1 PHD_FILE: MSMg01no375_b04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:32 2005
         (386 letters)



>mm_chr3_130558139_130558924
          Length = 786

 Score =  723 bits (374), Expect = 0.0
 Identities = 383/386 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catcagttggagcgaatagaaatgctcatcagagagcccccaccactaaaggagggtgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catcagttggagcgaatagaaatgctcatcagagagcccccaccactaaaggagggtgct 260

                                                                       
Query: 61  gttggagaccagccaccctcagtcaactcaccagtttgacccaagatgcaagtgaatcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 gttggagaccagccaccctcagtcaactcaccagtttgacccaagatgcaaatgaatcca 320

                                                                       
Query: 121 gcccaccttagccaggcttccaagaaggtagcaaatgacctgcattggaagtccaggact 180
           |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 gcccgccttagccaggcttccaagaaggtagcgaatgacctgcattggaagtccaggact 380

                                                                       
Query: 181 ggtagagaagagagagattcatgaagacgtcgggatggaaatcatccttgaccaatctcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtagagaagagagagattcatgaagacgtcgggatggaaatcatccttgaccaatctcc 440

                                                                       
Query: 241 tgtgtgcagtgtttggagtcccgagaacttcaaatgctgaagaagggtggcacacatccc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtgtgcagtgtttggagtcccgagaacttcaaatgctgaagaagggtggcacacatccc 500

                                                                       
Query: 301 cagggattccatgcctctcgggaagtggagagaagtaggttttacagtcccagctcccag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagggattccatgcctctcgggaagtggagagaagtaggttttacagtcccagctcccag 560

                                     
Query: 361 atgtacacacagtctacctactgcac 386
           ||||||||||||||||||||||||||
Sbjct: 561 atgtacacacagtctacctactgcac 586


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 786
Length adjustment: 9
Effective length of query: 377
Effective length of database: 777
Effective search space:   292929
Effective search space used:   292929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)