Query= MSMg01no375_b12.b1 MSMg01no375_b12.b1 CHROMAT_FILE:
MSMg01no375_b12.b1 PHD_FILE: MSMg01no375_b12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:34 2005
(434 letters)
>mm_chr3_84884952_84885786
Length = 835
Score = 801 bits (414), Expect = 0.0
Identities = 426/430 (99%), Gaps = 1/430 (0%)
Strand = Plus / Minus
Query: 6 gaattcaggttgagagctacaaaactcagcaaaacggcagagaattaaacaacatagctg 65
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 635 gaattcaggttgagagctacaaaactcagcaaaatggcagagaattaaacaatatagctg 576
Query: 66 gatgcatttgcacttagcaggaaaacctgagtagaatacttagaa-tttttttccaaaga 124
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 575 gatgcatttgcactttgcaggaaaacctgagtagaatacttagaattttttttccaaaga 516
Query: 125 cctattagatggatatgtttgtttatttcataatctaatctttcaattgcaaacttaata 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 cctattagatggatatgtttgtttatttcataatctaatctttcaattgcaaacttaata 456
Query: 185 tccaattaaatcacccctttaaaggaacgctggtttcagagactaattagcatgttaaga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tccaattaaatcacccctttaaaggaacgctggtttcagagactaattagcatgttaaga 396
Query: 245 aaggaagtttgctcattatttggggtctgtatagagctgaagcaacaggaatcgacctca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 aaggaagtttgctcattatttggggtctgtatagagctgaagcaacaggaatcgacctca 336
Query: 305 ctaaaaagatgctttccaggagccaagtagatgattggtgcggtaattacgttatttaag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 ctaaaaagatgctttccaggagccaagtagatgattggtgcggtaattacgttatttaag 276
Query: 365 gcccttctccggcactgaacgatgaatcgcatttgcataggtgaaacaaagactcaaatg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 gcccttctccggcactgaacgatgaatcgcatttgcataggtgaaacaaagactcaaatg 216
Query: 425 ggagaaaaca 434
||||||||||
Sbjct: 215 ggagaaaaca 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 835
Length adjustment: 9
Effective length of query: 425
Effective length of database: 826
Effective search space: 351050
Effective search space used: 351050
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no375_b12.g1 MSMg01no375_b12.g1 CHROMAT_FILE:
MSMg01no375_b12.g1 PHD_FILE: MSMg01no375_b12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:34 2005
(413 letters)
>mm_chr3_84737353_84738165
Length = 813
Score = 775 bits (401), Expect = 0.0
Identities = 410/413 (99%)
Strand = Plus / Plus
Query: 1 tgtgttcttctggagcccacagattaaatactcctacagatgctgctgttttgatgacag 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 tgtgttcttctggagcccacagattaaatactcctacagatgctcctgttttgatgacag 260
Query: 61 taaagtgaggcagggagaacatctaatttggtataaggataagcagatgggatactactt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaagtgaggcagggagaacatctaatttggtataaggataagcagatgggatactactt 320
Query: 121 tataagtatttctcaaaaataccctcgtatagtacgtaagatgacctcatgaggtatact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tataagtatttctcaaaaataccctcgtatagtacgtaagatgacctcatgaggtatact 380
Query: 181 gagttatagtattcctactcacttgtatgagagatctgaggcctaggagggtttaagaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagttatagtattcctactcacttgtatgagagatctgaggcctaggagggtttaagaac 440
Query: 241 ttgtcttaaaactagaagataagtaattacttttgaatgaggtcgtcaggccatgggact 300
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 441 ttgtcttaaaactagaagataagtaattacttttgaatgaggtcgtcaggccgtgggact 500
Query: 301 agtatgttagtaacctaatcacagtagagtggattttcattgcactgctgctagtatcac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtatgttagtaacctaatcacagtagagtggattttcattgcactgctgctagtatcac 560
Query: 361 tttgatcttgcctttggtgtgatgccactaatggccactcgaagaccctgagt 413
|||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 561 tttgatcttgcctttggtgtgatgccactaatggccactcaaagaccctgagt 613
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 813
Length adjustment: 9
Effective length of query: 404
Effective length of database: 804
Effective search space: 324816
Effective search space used: 324816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
