Query= MSMg01no375_d05.b1 MSMg01no375_d05.b1 CHROMAT_FILE:
MSMg01no375_d05.b1 PHD_FILE: MSMg01no375_d05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:43 2005
(508 letters)
>mm_chr3_158311211_158312118
Length = 908
Score = 959 bits (496), Expect = 0.0
Identities = 502/504 (99%)
Strand = Plus / Minus
Query: 5 gaattcccaaactaagccatcttgatgtttttctttttttctccttctcagtgctgtttt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 gaattcccaaactaagccatcttgatgtttttctttttttctccttctcagtgctgtttt 649
Query: 65 tgaggatacctttatttaacaaggaaggacacactaacactggcacaacggaaactccat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 tgaggatacctttatttaacaaggaaggacacactaacactggcacaacggaaactccat 589
Query: 125 gcaaaaattcaagtatgaagcatccacatcataagtgatgggtctgtaatactacgattg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 gcaaaaattcaagtatgaagcatccacatcataagtgatgggtctgtaatactacgattg 529
Query: 185 gcatggtcagggtctgcctactgtgtcataatctataaagattgtgatgggagtagcttc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 gcatggtcagggtctgcctactgtgtcataatctataaagattgtgatgggagtagcttc 469
Query: 245 atttcagtctgcttggaaaaggaagggaaaaggcagagggaaatactaacccatatagac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 atttcagtctgcttggaaaaggaagggaaaaggcagagggaaatactaacccatatagac 409
Query: 305 atagatgagaagcttcacatatcacttccattcacagtagaggtcatgacctgcctgcaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 atagatgagaagcttcacatatcacttccattcacagtagaggtcatgacctgcctgcaa 349
Query: 365 ctgagactcagaaaaggacaacagatgtgttttaacttaaaaatctgctacaaatcagaa 424
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 348 ctgagactcagaaaaggacaacagatgtgttttaacttaaagatctgctacaaatcagaa 289
Query: 425 agaggacaagatgcaccatatacaatggctacatctttaaatatggtcactgccaagaaa 484
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 288 agaggacaagatgcaccatatacaatggctacatctttaaatatgatcactgccaagaaa 229
Query: 485 atattaatgccaggatcttaaatt 508
||||||||||||||||||||||||
Sbjct: 228 atattaatgccaggatcttaaatt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space: 447204
Effective search space used: 447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no375_d05.g1 MSMg01no375_d05.g1 CHROMAT_FILE:
MSMg01no375_d05.g1 PHD_FILE: MSMg01no375_d05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:43 2005
(447 letters)
>mm_chr3_158134605_158135451
Length = 847
Score = 832 bits (430), Expect = 0.0
Identities = 445/454 (98%), Gaps = 7/454 (1%)
Strand = Plus / Plus
Query: 1 acagtcagtagaaagagaccaactaggccttgcttgtgcttttgaaactgcaaagcccac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acagtcagtagaaagagaccaactaggccttgcttgtgcttttgaaactgcaaagcccac 260
Query: 61 ccctaatgacaaacatcctccaacaaggtcatttctcctaatagtgcaattccctggtga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccctaatgacaaacatcctccaacaaggtcatttctcctaatagtgcaattccctggtga 320
Query: 121 tcatgtatttacatttatgaacctttggaggacattattattcaaatcacatttattctg 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcatgcatttacatttatgaacctttggaggacattattattcaaatcacatttattctg 380
Query: 181 gaaaaaagtaacctattgataaagacactatagtatccattgcagggtttttaaaaatct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaaaaagtaacctattgataaagacactatagtatccattgcagggtttttaaaaatct 440
Query: 241 atgctatttgtgttgttcccatttattaagaagccagaactatctgaattaatagtctat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgctatttgtgttgttcccatttattaagaagccagaactatctgaattaatagtctat 500
Query: 301 gcaaagaatctaataacaaataaaaaacattccctaagtcccaaaacaataatctttgtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcaaagaatctaataacaaataaaaaacattccctaagtcccaaaacaataatctttgtt 560
Query: 361 atgaaactcattcaaacacctgcctataaagtacaaattcagttagtgctcagtaagcac 420
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 561 atgaaactcattcaaacacctgcctataaagtacaaattcagtgagtgctcagtaagcac 620
Query: 421 tcatga-------gttaattcactttattattat 447
|||||| |||||||||||||||||||||
Sbjct: 621 tcatgaaacctgagttaattcactttattattat 654
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 847
Length adjustment: 10
Effective length of query: 437
Effective length of database: 837
Effective search space: 365769
Effective search space used: 365769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
