BAC Information

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BAC

Clone NameMSMg01-375D22
Chromosome3 (Build37)
Map Location 20,258,148 - 20,258,499
singlet/doubletsinglet
Overlap geneAgtr1b
Upstream geneDnajc5b, EG620290, Trim55, Crh, LOC665002, LOC100039304, LOC100040237, 4632415L05Rik, Cp, Hps3, Hltf, Gyg, Cpa3, EG664965, LOC100040283, Cpb1
Downstream geneEG665094
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-375D22.T7 (MSMg01no375_d22.b1)MSMg01-375D22.TJ (MSMg01no375_d22.g1)
ACCAG480846AG480847
length785777
length of high quality
(start - end)		419 (51 - 469)425 (79 - 503)
definitionCHROMAT_FILE: MSMg01no375_d22.b1 PHD_FILE: MSMg01no375_d22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:46 2005CHROMAT_FILE: MSMg01no375_d22.g1 PHD_FILE: MSMg01no375_d22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNTTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTATCAGAGCTTCAAAGAAGACTTGAAACCAATACTTCTCA
AACTATTCCACAAAATAGAAACAGAAGGAACACTACCTCCTTTGTTCTAT
GAAGCCACAGTTATGCTATACGTAAACCCAACAAAGAAAGAAAACTTCAG
ACCAATTTTGGTTATGAATATCAATGTGAAAATACTCAAGAAAATTCTTG
CCAACCGAATCTAAGAACACATCAAAATGATCATTCACTACAATCAAGTA
GACTTCATCCCAGGGATGCAGGGATGGTTCAGTATACAGAAATCCATCAT
CGTAATCCACTATATAAACAAACTCAAAGGAAAAAAAATCACATGATCAT
CTCATTAGATGCTAAAAAAGTCTTTGACAAAATACAACACTTCATATTAN
AGATCAGAGAGATCAGAANATCAAGGTGCATGTCCAAGCATAATAAGATC
AACACACAGCAAACCAACAGCCAATTAAAATTAAATTGAGAGAAACGTGA
GTTATCTCAGTATAATCAGGNNCAAGGGCTCATCTCACCATTTAATTCAT
ATAGGACTTGAAGGTCTAGCCCGAGCAATAGACAATGGAAGGAGGGCCAA
GGAATCAAATGGGAAAGGAAGAAAAAAGGGGGGCCCACCTTGGGAGAAAA
GGAAAAGGAACCCCAAATCTTCCCCCAGAAAAACCCGGAAAACACTTTAT
GCAAAGGGGGGGGGATAAATTTAATCAAACGCCCC

NNNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTAATCTCAAACCCTGTCCTATT
AATTTCAGCCCACAGTCTGTTCTCTACTGTAGGTTACCTATGTTTTAATG
AAAGCTAACTATTTAAAAGTTGAAAGTTAGAATTTGAAATCAAGTCCTAT
TTTTCTTTTCTTTTCTTTGAGTTTTTTTTTTAGTTATATATTTTCTTCCA
TCTTCTACTACATATGCAACTAGAGACACAGCTCTGGNGGGTGGGGGTGG
GGGCTACTGGTTAGTTCATATTATTGTTCCTCCTATAGGGTTGCAGACCT
CTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTTCATTTGGGGCCCTGTGC
TCCATCCAATAGCTGACTGTGTGCATCCACTTGTGTATTTGCCAGGCACT
GGCAGAGCCTCTCAGGAGACAGCTATGTCAGGCTCCTGTCAGCAAAATCT
GGCTGGCATATGCAATAGTGGTCCGGGTTTGGGGGTTGGTTATGGGAAGG
GATCCCCCTGTGGGCGATCCCCTGGGGGGTCCCTCCTCTCTGTCCTAGGT
CCAAACCTTTTTCCCCGGAAACCCCTCCGGGGGGAATTTGTGCCCCCCTC
TCAGGTGGTAAAACGAATTCTCCCCGGGCGTCCTTTCTCTTGAATCTAGG
GGGTTAGCCAACTTCTATTTGGTAACTCTTTCCCCGGGACATTATTTCAA
CTATTCGGTGCATTCTCCGTTTATCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no375_d22.g1 MSMg01no375_d22.g1 CHROMAT_FILE:
MSMg01no375_d22.g1 PHD_FILE: MSMg01no375_d22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:47 2005
         (425 letters)



>mm_chr3_20258148_20258971
          Length = 824

 Score =  605 bits (313), Expect = e-177
 Identities = 342/355 (96%), Gaps = 8/355 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   taatctcaaaccctgtcctattaatttcagcccacagtctgttctctactgtaggttacc 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 taatctcaaaccctgt-ctattaatttcagcccacagtctgttctctactgtaggttacc 294

                                                                       
Query: 61  tatgttttaatgaaagctaactatttaaaagttgaaagttagaatttgaaatcaagtcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 tatgttttaatgaaagctaactatttaaaagttgaaagttagaatttgaaatcaagtcct 234

                                                                       
Query: 121 atttttcttttcttttctttgagtttttttttt-----agttatatattttcttccatct 175
           ||||||||||||||||||||| |||||||||||     ||||||||||||||||||||||
Sbjct: 233 atttttcttttcttttctttgggtttttttttttttttagttatatattttcttccatct 174

                                                                       
Query: 176 tctactacatatgcaactagagacacagctctggngggtgggggtgggggctactggtta 235
           ||||||||||||||||||||||||||||||||||  |||||||||||||| |||||||||
Sbjct: 173 tctactacatatgcaactagagacacagctctgg--ggtgggggtgggggttactggtta 116

                                                                       
Query: 236 gttcatattattgttcctcctatagggttgcagacctctttagctccttgggtactttct 295
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 115 gttcatattattgttcctcctatagggttgcagacccctttagctccttgggtactttct 56

                                                                  
Query: 296 ctagctccttcatttggggccctgtgctccatccaatagctgactgtgtgcatcc 350
           |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct: 55  ctagctccttcattgggggccctgtgctccatccaatagctgactgtgagcatcc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 824
Length adjustment: 9
Effective length of query: 416
Effective length of database: 815
Effective search space:   339040
Effective search space used:   339040
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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