BAC Information

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BAC

Clone NameMSMg01-375F17
Chromosome3 (Build37)
Map Location 148,003,704 - 148,161,465
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100040354, Lphn2, LOC100040368, LOC668893, EG381483
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-375F17.T7 (MSMg01no375_f17.b1)MSMg01-375F17.TJ (MSMg01no375_f17.g1)
ACCAG480931AG480932
length776828
length of high quality
(start - end)		458 (48 - 505)208 (77 - 284)
definitionCHROMAT_FILE: MSMg01no375_f17.b1 PHD_FILE: MSMg01no375_f17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:55 2005CHROMAT_FILE: MSMg01no375_f17.g1 PHD_FILE: MSMg01no375_f17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,161,012 - 148,161,465)(148,003,704 - 148,003,880)
sequence
NCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTGTACGTTATTGTTACAATTATTACCATGAATCACCAGCAT
GCGCGTGCACACACACACTAACACTTCTCTGTAGTTTTCCGATTTTGGGC
AAGGTCCATCTCTGAACCTTAATCTGTTGGAGTGACTTAAAGGGACCTTG
TGGCATTTGGGATTTCTACATGAGGATTGAATAACATATCTCTGGGGATC
TACGCTGGCATTTCCTAATCACTGACCCAATGTTGCAGTGCTCAGCCTTG
GCCATTTATTGCATATACTTAACACAGTCATAATTATTTGTCTCTGAACA
AATGATGCATCATCTGGAACTCACATTGAATAACTGCTTTGTGCCAGATG
TGGAGGTAACGAGTGAATGACCTATATATTGTTCTTCATCGTGTCACAGG
CTTCAGCACATTGTTAAAATATTCATATTCTTCTGATAGCACTGATGATT
TCTGTAAGATATTTGTTTTAGAAACTCACCTGTGGTGATGAANGATTGCA
GTGCTTTTGAATCACAATGGGTTGATACAATTGAAGGGGGTATGAAACTG
TAATATAAAGTTTTCTTCCTGGGGGAAAAAAATCTCCAATGACCTCCATA
AAACGGGCACAAGCGCTTTCGGGAAATTTTAAAAAACTCCGGGATTTTTA
AAAAACCCACTGGCCTTAAAAGGGAGAAATTATCTTTGTACGGGACAAGG
TTTTTTGGAAATCTCTAATTAAGTGG

TTCTATGATGTGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTATTTCAGATAAGATAGAATGTA
AGGATAGAAGTTACCCCCTAATCTCCAAGTGCAACCATGGCATGCAATGT
GACACAGAACACACATATGTATGCATGTGCCTGTGCACACCAGAGATAGA
TAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATA
GATAGATAGATAGATAGATAGATAGATAGATGCCCNNCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCTTTTTTTTTCCCNCCNCCCCCNCCTCNTC
TCTCCTCTTTCCCTTCTTCTTTCCTCTTTTTTTCTTTCCCATTTTCTCCT
CCCCTCTCCTCTTCTCCTCCCCCCCCCCCCTCCCTTCCCTTTTTCTCTTC
TTTTTCTCTTTTTCCCTTTTTTTCTCTTCTCCCTCTTTTTTTCTTTTTTT
TCTTCCCTTTTCTCCTCTTTCTTTTTCTTTCTTTCCTCCTTCCCTCCTTC
TTCCCTCCCTTTTTTCTTTTTCTTTCCCTTCTTCTTCTTTTTTTTTTCCT
CCCCTTTCTTTTTTTTTCCCCCTTCCCCTTTTTTTTTTTCCTCCCTCCTT
CTTTTCTTTTCCCTTCTTTCCTCTCCTTTTTTCCTCTCCCTCTCAATATT
CCACAATTTATCTCTCCTTTCCCACTATCTAATTTATTCATCCTTACCCC
CCATTTCATTCCCTACTATTTTATTTTATCTATCCATCCCCCCTTTTATT
TCTCCACCTTATTTTCCTCCCCCTATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no375_f17.b1 MSMg01no375_f17.b1 CHROMAT_FILE:
MSMg01no375_f17.b1 PHD_FILE: MSMg01no375_f17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:55 2005
         (458 letters)



>mm_chr3_148160808_148161665
          Length = 858

 Score =  870 bits (450), Expect = 0.0
 Identities = 453/454 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttgtacgttattgttacaattattaccatgaatcaccagcatgcgcgtgcaca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 gaattctttgtacgttattgttacaattattaccatgaatcaccagcatgcgcgtgcaca 599

                                                                       
Query: 65  cacacactaacacttctctgtagttttccgattttgggcaaggtccatctctgaacctta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 cacacactaacacttctctgtagttttccgattttgggcaaggtccatctctgaacctta 539

                                                                       
Query: 125 atctgttggagtgacttaaagggaccttgtggcatttgggatttctacatgaggattgaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 atctgttggagtgacttaaagggaccttgtggcatttgggatttctacatgaggattgaa 479

                                                                       
Query: 185 taacatatctctggggatctacgctggcatttcctaatcactgacccaatgttgcagtgc 244
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 taacatatctctgggtatctacgctggcatttcctaatcactgacccaatgttgcagtgc 419

                                                                       
Query: 245 tcagccttggccatttattgcatatacttaacacagtcataattatttgtctctgaacaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tcagccttggccatttattgcatatacttaacacagtcataattatttgtctctgaacaa 359

                                                                       
Query: 305 atgatgcatcatctggaactcacattgaataactgctttgtgccagatgtggaggtaacg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 atgatgcatcatctggaactcacattgaataactgctttgtgccagatgtggaggtaacg 299

                                                                       
Query: 365 agtgaatgacctatatattgttcttcatcgtgtcacaggcttcagcacattgttaaaata 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 agtgaatgacctatatattgttcttcatcgtgtcacaggcttcagcacattgttaaaata 239

                                             
Query: 425 ttcatattcttctgatagcactgatgatttctgt 458
           ||||||||||||||||||||||||||||||||||
Sbjct: 238 ttcatattcttctgatagcactgatgatttctgt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 858
Length adjustment: 10
Effective length of query: 448
Effective length of database: 848
Effective search space:   379904
Effective search space used:   379904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no375_f17.g1 MSMg01no375_f17.g1 CHROMAT_FILE:
MSMg01no375_f17.g1 PHD_FILE: MSMg01no375_f17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:55 2005
         (208 letters)



>mm_chr3_148003504_148004111
          Length = 608

 Score =  342 bits (177), Expect = 7e-99
 Identities = 177/177 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctatttcagataagatagaatgtaaggatagaagttaccccctaatctccaagtgcaacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctatttcagataagatagaatgtaaggatagaagttaccccctaatctccaagtgcaacc 260

                                                                       
Query: 61  atggcatgcaatgtgacacagaacacacatatgtatgcatgtgcctgtgcacaccagaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atggcatgcaatgtgacacagaacacacatatgtatgcatgtgcctgtgcacaccagaga 320

                                                                    
Query: 121 tagatagatagatagatagatagatagatagatagatagatagatagatagatagat 177
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagatagatagatagatagatagatagatagatagatagatagatagatagatagat 377


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 24
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 1
Length of query: 208
Length of database: 608
Length adjustment: 9
Effective length of query: 199
Effective length of database: 599
Effective search space:   119201
Effective search space used:   119201
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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