BAC Information

Click to search

BAC

Clone NameMSMg01-375F22
Chromosome3 (Build37)
Map Location 127,817,349 - 128,005,963
singlet/doubletdoublet
Overlap geneEG668828
Upstream geneLOC100043749, LOC100043361, LOC100043364, Larp7, 4930422G04Rik, Neurog2, Alpk1, T2bp, BC002199, 5730508B09Rik, LOC100043382
Downstream geneLOC100043393, EG668831, Pitx2, Enpep
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-375F22.T7 (MSMg01no375_f22.b1)MSMg01-375F22.TJ (MSMg01no375_f22.g1)
ACCAG480940AG480941
length780795
length of high quality
(start - end)		480 (51 - 530)463 (81 - 543)
definitionCHROMAT_FILE: MSMg01no375_f22.b1 PHD_FILE: MSMg01no375_f22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:56 2005CHROMAT_FILE: MSMg01no375_f22.g1 PHD_FILE: MSMg01no375_f22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,817,349 - 127,817,824)(128,005,595 - 128,005,963)
sequence
NNNCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCATAGTCTTGGCATGCCAATGGTATATTCTGGTTTAGTGAC
TTCATAGGTGAAACCATCATCCAATTTCTTCAACTTTCGTTCTCCAGAGA
CCATTGTCACATGTAGTGTCTGACAAAATCAGACAAATTACACAAGCGGA
GACAGTCTCATCTCAAGGTCCTATGCAAATTCTTATTCCTTATAACTCAC
CCTACACTTCTTTGACATCATAAGCACAAATGATTTTTGTTTGACAAGCT
TTATCTAGGAGTGGGGCTCCTTTTTTAGGGCTTCCAGAGCTAAACTGATT
TCCTGGCAAAGACAGCATGAAAAAGTACTCAGAACACAGACTTCAGAGCC
AGGAGATGTGGGCCCCCCACCATTTGCCACTTTCTCTTGGGAAAGCTACA
CAATCTTCCTAAAGCCTCAGTTCGTTTTGCATTGGTTATCAGTTTAGACA
TGGTTGGTTGTTTTGTTTGGTGCTACTCAAAATGCATTCGACTCTCCAGA
AGCCCAGGGAGAGCAGCTCAAGAAACACAAGGGCAGGGCTGGGTCTTCCT
GGCCTGGGATTTGAATCCTTCTTTTCCCAGGGAACAATTGGTAAGGAAAA
AAAGTTTTCTAATGTGGATTCTGAGGACTATTATAGGGGGGGGGATGGTT
AACGATGGATAAAAAAAATTCCTCAAACAACTTTATAGGTTTTCTTTCCG
GCTCGGAAAACCCGCCCCCCTTTTTTTGAA

NNNCCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGAATCCTATGACATAACTC
ATAGCTACTGTTTTCAGACAGTCTGCTCATGCAGACATCACAGTCATTCT
AAAGTCTGACTTCAACTTTTCTTTTCAATTAGTAAAATATTTGACTTGAT
ATCTTAAAGTTTTCACTTAATACCACAATTAAAAATAACAACAAATAGTC
CAAGCATGATAGTGCACACCTTTATTCCCAGCATTTGGGAGGCAGAGGCA
GGCAGATCTCTGTGAGTTCAAGGCCACTCTTGTCGACAAAGTGAGTCCCA
AGAAAGTTGGAGTTATATAGTAAAAAGTTGTCTCAGGAGCAAACAAATAA
ACAACAAAATAAAATAGACTGGAGTCAGTCAACGGTAGCTAGAGTTTATT
ATTAATGGGGATATTAAAAACCAATTGACAACAAGCTGTTAGGTTGAAAC
TAATCACAGTAAGATCATTGACACAGTAAAATGGAAATTATGTAACTTTT
TATTTTAAGAACCAGTTGTTAAAACTTAATGTCATACCACCTGGTCTTTA
AGCTGGATAAGCCAACTGCGGAAATAAACCACAAAAAACTGGGAAGGGGG
GGTCCATTCCCCCAATGGGGCCCTCACCTAACCATGAAGAACTCCGGGAA
AAAAATTTCCCACACCCCCCCTTTAAAAAGCCCAAAAAAAGAGACTCTTT
TGAGGCCTCCCTTCTTGTTAAAAAAAGGGGAAACATTAATTCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no375_f22.b1 MSMg01no375_f22.b1 CHROMAT_FILE:
MSMg01no375_f22.b1 PHD_FILE: MSMg01no375_f22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:56 2005
         (480 letters)



>mm_chr3_127817145_127818024
          Length = 880

 Score =  897 bits (464), Expect = 0.0
 Identities = 473/476 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatagtcttggcatgccaatggtatattctggtttagtgacttcataggtgaaac 64
           ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatagtctaggcacgccaatggtatattctggtttagtgacttcataggtgaaac 264

                                                                       
Query: 65  catcatccaatttcttcaactttcgttctccagagaccattgtcacatgtagtgtctgac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 catcatccaatttcttcaactttcgttctccagagaccattgtcacatgtagtgtctgac 324

                                                                       
Query: 125 aaaatcagacaaattacacaagcggagacagtctcatctcaaggtcctatgcaaattctt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaaatcagacaaattacacaagcggagacagtctcatctcaaggtcctatgcaaattctt 384

                                                                       
Query: 185 attccttataactcaccctacacttctttgacatcataagcacaaatgatttttgtttga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 attccttataactcaccctacacttctttgacatcataagcacaaatgatttttgtttga 444

                                                                       
Query: 245 caagctttatctaggagtggggctccttttttagggcttccagagctaaactgatttcct 304
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 445 caagctttatctaggagtggggctccttttttagggcttccagagataaactgatttcct 504

                                                                       
Query: 305 ggcaaagacagcatgaaaaagtactcagaacacagacttcagagccaggagatgtgggcc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggcaaagacagcatgaaaaagtactcagaacacagacttcagagccaggagatgtgggcc 564

                                                                       
Query: 365 ccccaccatttgccactttctcttgggaaagctacacaatcttcctaaagcctcagttcg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ccccaccatttgccactttctcttgggaaagctacacaatcttcctaaagcctcagttcg 624

                                                                   
Query: 425 ttttgcattggttatcagtttagacatggttggttgttttgtttggtgctactcaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttttgcattggttatcagtttagacatggttggttgttttgtttggtgctactcaa 680


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space:   408900
Effective search space used:   408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no375_f22.g1 MSMg01no375_f22.g1 CHROMAT_FILE:
MSMg01no375_f22.g1 PHD_FILE: MSMg01no375_f22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:57 2005
         (463 letters)



>mm_chr3_128005595_128006457
          Length = 863

 Score =  706 bits (365), Expect = 0.0
 Identities = 368/369 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgaatcctatgacataactcatagctactgttttcagacagtctgctcatgcagacatca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tgaatcctatgacataactcatagctactgttttcagacagtctgctcatgcagacatca 310

                                                                       
Query: 61  cagtcattctaaagtctgacttcaacttttcttttcaattagtaaaatatttgacttgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 cagtcattctaaagtctgacttcaacttttcttttcaattagtaaaatatttgacttgat 250

                                                                       
Query: 121 atcttaaagttttcacttaataccacaattaaaaataacaacaaatagtccaagcatgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 atcttaaagttttcacttaataccacaattaaaaataacaacaaatagtccaagcatgat 190

                                                                       
Query: 181 agtgcacacctttattcccagcatttgggaggcagaggcaggcagatctctgtgagttca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 agtgcacacctttattcccagcatttgggaggcagaggcaggcagatctctgtgagttca 130

                                                                       
Query: 241 aggccactcttgtcgacaaagtgagtcccaagaaagttggagttatatagtaaaaagttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 aggccactcttgtcgacaaagtgagtcccaagaaagttggagttatatagtaaaaagttg 70

                                                                       
Query: 301 tctcaggagcaaacaaataaacaacaaaataaaatagactggagtcagtcaacggtagct 360
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  tctcaggaacaaacaaataaacaacaaaataaaatagactggagtcagtcaacggtagct 10

                    
Query: 361 agagtttat 369
           |||||||||
Sbjct: 9   agagtttat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 863
Length adjustment: 10
Effective length of query: 453
Effective length of database: 853
Effective search space:   386409
Effective search space used:   386409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |