GTTTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCAATCATTTTCCAATCAAATATCTTCCAGTCTTCCAAAT
GTCTTCCTTTCTTCCCCTTTCTTTCTTTCTTTCTTTTTTTTTCTTTTGTG
AGATAGGGTCACATATAGCACAGGCTAGCCCCAACTCGCTACGTAGCCAA
GGGCAACCTTGATAACCATCCAGTGAGTACTGACCTCATAGCCATGTATA
CATTATACAGTATACATTAATGTGGATCAAACCCAGGGCCTCACGCATGC
TAAGCAAACACTATCACCTGTCCCAAAGAGTCTTTTTTTAAAAAAACAGA
TCTCAGTTTTAATTTTTACTTACATGTATACATGTGTGTCTGTGTGTAGC
TGTGTGCACATGAGTTTAGTGCCCATGTTGGCAAGAAGAGGGCACCAGGT
CCTCTGGAGCTGGCGGTACAGGCTATTGTGAGCTGCCCAAAGTGTGTGCC
AAGAACAGAACTCGGGCCCTCTGCAAGAGCAGCTTGAGTTCCTAACCACT
GAGCTGTCTCTGCAGCTGCCCAAAGAATCCTCCATACAGCCATCTTTTTG
GATTGTCAGACTGTCCTCTGGTTTCTGTGCCCTAGTTGCCTTTCCCGGTA
AAGAAATTTAATTATAGGCCGTTTAGGGCCATTTCCTCCTTTTGATAACC
CCATCTTGGCGTCCGCCTCTTTCTTCTTCAACGCGTCTATTTTACATGGT
TTTCCCTGTTTTTGGTGGTN

NNNNNAACGATGATAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACATCCAGGCACTCACTT
CAGGTAGCTAATAAACTCTGGCTTTTTCTGTAACTCTGAGGAACCATATA
ACAATCATACAAGACTATGCACACATGAAAATAAAATAAATCTTTTAAAA
AGTTAGCACAGATTTATATATGTAAAATAATTAACAGATACATAAATACT
ATAATGTTAATGGTACATTTTCCTGGAAAAACACTTGAAGCTAGATTGTT
TCAGAAGTAGCATTTGAAGCATTATAGTTTGCTAATTACTATGAATTGAT
AGAAGGCTTTTTTTAAAAATCAGATACAAGGAAGCATCAGAAGTGGGTAA
GTGTGGCACAGTTTGACTCAGAGCACACAGGGAGAACTCAGGTAATTGGT
AGATACTTGATGTCATTGCAGTAGTGTGCTGTGCATATCCACCAGACTTG
TTTCAGCTGACCGTTTTCATGTTAGTTTTCTGGCAATTAAAATCCTACAG
AAGCAAACATGATATTTAAAGAGATTAAAATGTCCCCTAATATATTAATT
CTATTGGAGCAAATGTATATATTGAAAACAAGCATTAATACAGAGTTTGT
TGTTCCCTAACTAATAGCATCGCAAAAGACCATGGGCTTTTGTGGTGGTC
CTTCTGCCTAACTAGAACCTTGGTACTCTCTTGATAAAAGTATTGGAGGC
ACCTTTCCG

Query= MSMg01no375_p02.g1 MSMg01no375_p02.g1 CHROMAT_FILE:
MSMg01no375_p02.g1 PHD_FILE: MSMg01no375_p02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:42 2005
         (501 letters)



>mm_chr3_51234696_51235598
          Length = 903

 Score =  922 bits (477), Expect = 0.0
 Identities = 496/503 (98%), Gaps = 2/503 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acatccaggcactcacttcaggtagctaataaactctggctttttctgtaactctgagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 acatccaggcactcacttcaggtagctaataaactctggctttttctgtaactctgaaga 260

                                                                       
Query: 61  accatataacaatcatacaagactatgcacacatgaaaataaaataaatcttttaaaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 accatataacaatcatacaagactatgcacacatgaaaataaaataaatctttaaaaaag 320

                                                                       
Query: 121 ttagcacagatttatatatgtaaaataattaacagatacataaatactataatgttaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttagcacagatttatatatgtaaaataattaacagatacataaatactataatgttaatg 380

                                                                       
Query: 181 gtacattttcctggaaaaacacttgaagctagattgtttcagaagtagcatttgaagcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtacattttcctggaaaaacacttgaagctagattgtttcagaagtagcatttgaagcat 440

                                                                       
Query: 241 tatagtttgctaattactatgaattgatagaaggctttttttaaaaatcaga--tacaag 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 441 tatagtttgctaattactatgaattgatagaaggctttttttaaaaatcagagatacaag 500

                                                                       
Query: 299 gaagcatcagaagtgggtaagtgtggcacagtttgactcagagcacacagggagaactca 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaagcatcagaagtgggtaagtgtggcacagtttgactcagagcacacagggagaactca 560

                                                                       
Query: 359 ggtaattggtagatacttgatgtcattgcagtagtgtgctgtgcatatccaccagacttg 418
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 561 ggtaattggtagatacttgatgtcattgcagtagtgtgctgtgcatacccaccagacttg 620

                                                                       
Query: 419 tttcagctgaccgttttcatgttagttttctggcaattaaaatcctacagaagcaaacat 478
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttttagctgaccgttttcatgttagttttctggcaattaaaatcctacagaagcaaacat 680

                                  
Query: 479 gatatttaaagagattaaaatgt 501
           || ||||||||||||||||||||
Sbjct: 681 gaaatttaaagagattaaaatgt 703


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 903
Length adjustment: 10
Effective length of query: 491
Effective length of database: 893
Effective search space:   438463
Effective search space used:   438463
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)