NTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTGAGAATTGCCAGCAGAGTTTTGACTCTGTGCCAAGTTCCTAC
CAGTTAAGCCCTCTAACTGACCCTTGCTTACCACATATGTATGCTTCGCT
TTGGTATAATTTCTGTATTGCTTTCATACCCTTATTCCTTATAGTAAACA
TTCTGATTTTTACAATGGTTTTCTTGTGATAGTTATTTTGTATTACAGTA
CTCAATAAAATTAATTGATTTTATAATTATTTACTAAATTTCTACTACAT
TCCATGTACTATGTTGTCCTGTGTGATAATAAAACAAACCAAACACTTCA
TTTCAGACCTTATTTTTAGCAAAGGGAGAAAAAGAATTTGATAAAATATA
AATGAACCATATGCAAAGTGATCTTCAGTAGAAAGAATAATAAGTGGGGC
TAAAAATGAGAGAAAACTGGGATGGAATATGGCAGAGTTACAATTTTGAA
CAGGGATTTTAGGACAAATTTACTGAAAAAAATTAACATTTTAAGCTAAA
ACTGCTTATAGAATTATTATACTTGTTGACTCTTNGANGCACTACTATTA
ATATTTTTTAATAATTAATGGAAGGAGGTACCTGGGTGGTAAAAGGGATA
CTGTCTGCTCTTTTAAGCTTGAATGAGAACCGAAAAATGGTTAATCCCGG
CTCACCTGCTAAATAGAAACCTCCCCCCGTGGAAAA

NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGTCAGTTCTAGTCAGGAAACTGGA
AATCTGTGTAGTGAATGCAGTGTGGTGGAGTTGAGTCGTTTGTGCATTCA
TATAGAACTCATGTTTCAGTGCACATCAGCAGAGGCAGTTAAAGCCAGAA
AATAAGAATGAGCCAGATCACAACAAAGTGCCAGTGTTAGTTTGACACCA
AAAAGAGCAATTCAATGAGTAACTGAGAGAACCCAGTTTGAATCAGTCAG
CTTGGAGAGGAGTTTGAGCCAGAACAGCTGAGTTGAAGTAGCTAGCTGGA
GTTTAGAAAGAGCTAGAAAGGGTGAACTTATTCAGTTGTAAGCCCCCAAG
ATGACAATTAAATCAAGCAAATAAAAGTTACTTTTGCACATGAGAACATT
CAAAAGAAACAGAACAATATACCAAAATCAGTACCACAGGGTTTTTCACA
CTTTTATGAGAATGGCTAAATCTTGGGACTTTTCATTCCTTAAAGAAAAT
GCTTTCCCCTAAAGCTAAGAGACAACCTTCATTAAGAGGGCATGTTTAAA
GATAGCATAAGAGTGAGAGGCCTTTTGAACAGGGTTAACAGGAAGAAACC
TGTAGGGAAGTTTTCCAAAAATACTTTGTACAAAAAAAATCCTGTTCGGA
AGGAAAATCCTTCCCAAAGGAAATTTAACCTGGGATTACTGTTCTGGGGA
AGAA

Query= MSMg01no376_d19.b1 MSMg01no376_d19.b1 CHROMAT_FILE:
MSMg01no376_d19.b1 PHD_FILE: MSMg01no376_d19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:05 2005
         (506 letters)



>mm_chr3_141049490_141050395
          Length = 906

 Score =  884 bits (457), Expect = 0.0
 Identities = 478/485 (98%)
 Strand = Plus / Minus

                                                                       
Query: 18  gccaagttcctaccagttaagccctctaactgacccttgcttaccacatatgtatgcttc 77
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 906 gccaagttcctaccagttaagccctctaactgacccttgcttaccgcatatgtatgcttc 847

                                                                       
Query: 78  gctttggtataatttctgtattgctttcatacccttattccttatagtaaacattctgat 137
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 gctttggtataatttccgtattgctttcatacccttattccttatagtaaacattctgat 787

                                                                       
Query: 138 ttttacaatggttttcttgtgatagttattttgtattacagtactcaataaaattaattg 197
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 786 ttttacaatggttttcttgtgatagttattttttattacagtactcaataaaattaattg 727

                                                                       
Query: 198 attttataattatttactaaatttctactacattccatgtactatgttgtcctgtgtgat 257
           ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 attttgtaattattcactaaatttctactacattccatgtactatgttgtcctgtgtgat 667

                                                                       
Query: 258 aataaaacaaaccaaacacttcatttcagaccttatttttagcaaagggagaaaaagaat 317
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 aataaaacaaaccaaacacttcatttcagaccttatttttagcaaagggagaaaaagaat 607

                                                                       
Query: 318 ttgataaaatataaatgaaccatatgcaaagtgatcttcagtagaaagaataataagtgg 377
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttgataaaatataaatgaaccatatgcaaagtgatcttcagtagaaagaataataagtgg 547

                                                                       
Query: 378 ggctaaaaatgagagaaaactgggatggaatatggcagagttacaattttgaacagggat 437
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 ggctaaaaatgagagaaaactgggatggaatatggcagagttacaattttgaacagggat 487

                                                                       
Query: 438 tttaggacaaatttactgaaaaaaattaacattttaagctaaaactgcttatagaattat 497
           |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 486 tttaggacaaatttactgaaaaaatttaacattttaagctaaaactgcttataggattat 427

                
Query: 498 tatac 502
           |||||
Sbjct: 426 tatac 422


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space:   444416
Effective search space used:   444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)