BAC Information

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BAC

Clone NameMSMg01-376H11
Chromosome3 (Build37)
Map Location 81,827,927 - 81,828,366
singlet/doubletsinglet
Overlap genenone
Upstream genePdgfc, LOC229443, LOC100041901, Ctso, Tdo2, Accn5
Downstream geneGucy1b3, Gucy1a3, Mtap9, Npy2r, LOC100041940, EG633285, Lrat, Fgg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-376H11.T7 (MSMg01no376_h11.b1)MSMg01-376H11.TJ (MSMg01no376_h11.g1)
ACCAG481776AG481777
length751733
length of high quality
(start - end)
477 (46 - 522)461 (74 - 534)
definitionCHROMAT_FILE: MSMg01no376_h11.b1 PHD_FILE: MSMg01no376_h11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:22 2005CHROMAT_FILE: MSMg01no376_h11.g1 PHD_FILE: MSMg01no376_h11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTACTTTTGCGCGCATTTTTTTTATTATTCTTAATTCAATACACAT
CACTGCCTTATGATCTCTTACAAACCAATCACACCATGTCCTAAGCACCA
TGTTTAGCTATTTCTTAAACATAGTTATGCAGGCTAGTTTGCTGGGGCAG
TATGCACTTCAATGTTTCATTCATTTCTCGTATTTTCTGAATAATCTCCT
TCTCATGGAAATGTCTAAATTTCTCTGACTTTTGAACATATGCATTTTCT
GATAAATGTCCCCCAGTTTCTTCGATCACAATTTAAATTGTCTGCATTTA
AATGTAAAACGTGCGAGCAATAGGGAACCTTTACTTGCACTAAAACAATG
GCTCTGCAAATCTAGCCAGATACTTGGATATACTTTATGTAAAATTTAAC
ATAGAAAACTTTATGCAGGTAATCTCCACTTTCTCTTTTGAATATTAAAG
GTTTCCAAAAATGGCAACTTCAAACTAAGAATGAAATGAAATGGAGAGAT
GGCTCAAAGGTTAAGAGCACTGGCTGCTCTTCCAAAAAGTCCTGAGTTTC
ATTCTCAGTAATCACAAGATAGCTCACAAACATCTATAATGAAATCTGGT
GCCTCCTTCTGGCTTGCNAGCTTACATGCAGGCCGAACGCTTTCTTTCCC
CCAATTATTTTAAACCTTCCAAAAAAAAAAAAGAATGGATTTTTTTGTCC
G
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAG
AAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAAT
CAAAACAAGCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCA
AAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGTAGAAAGAGGAACA
CTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATC
AGTCTGGCGGTTCCTCATATAATTGGACACAGTACTACCAGAGGATCCAG
CAATACCTCTCCTTGGCATTTATCCAGAAGATACCCCAACTGGTAAGAAG
GACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAG
CTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGT
GGTACATCTACACAATGGAGTACTACTCAGCTATTAGAAAGAATGAATTT
ATGACATTCCTAGCCCAATGGATGGACCTGGAGGGCATCATCCTGAGTGA
GGTAACACATTCTCAAAGGAACTCACACAATATATACTCACTGATAAGGG
GATATTAGCCCCTAACCTAGGATTCCCAAGATATAAGGTACAATTTGGTT
AACACATGGAACTCATGAAGAATGAAGACTGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no376_h11.b1 MSMg01no376_h11.b1 CHROMAT_FILE:
MSMg01no376_h11.b1 PHD_FILE: MSMg01no376_h11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:22 2005
         (477 letters)



>mm_chr3_81827690_81828566
          Length = 877

 Score =  812 bits (420), Expect = 0.0
 Identities = 435/440 (98%)
 Strand = Plus / Plus

                                                                       
Query: 38  tcttaattcaatacacatcactgccttatgatctcttacaaaccaatcacaccatgtcct 97
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tcttaattcaatacacatcactgccttatgatctcttacaaaccaatcacaccatgtcct 297

                                                                       
Query: 98  aagcaccatgtttagctatttcttaaacatagttatgcaggctagtttgctggggcagta 157
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 aagcaccatgtttagctatttcttaaacatagttatgcaggctagtttgctggggcagta 357

                                                                       
Query: 158 tgcacttcaatgtttcattcatttctcgtattttctgaataatctccttctcatggaaat 217
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 358 tgcacttcaatgtttcattcatttctcctattttctgaataatctccttctcatggaaat 417

                                                                       
Query: 218 gtctaaatttctctgacttttgaacatatgcattttctgataaatgtcccccagtttctt 277
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 418 gtctaaatttctctgacttttgaacatatgcattttctgataaatgtcccccagcttctt 477

                                                                       
Query: 278 cgatcacaatttaaattgtctgcatttaaatgtaaaacgtgcgagcaatagggaaccttt 337
           ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 478 cgatcgcaatttaaattgtctgcatctaaatgtaaaacgtgcgagcaatagggaaccttt 537

                                                                       
Query: 338 acttgcactaaaacaatggctctgcaaatctagccagatacttggatatactttatgtaa 397
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 acttgcactaaaacaatggatctgcaaatctagccagatacttggatatactttatgtaa 597

                                                                       
Query: 398 aatttaacatagaaaactttatgcaggtaatctccactttctcttttgaatattaaaggt 457
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 aatttaacatagaaaactttatgcaggtaatctccactttctcttttgaatattaaaggt 657

                               
Query: 458 ttccaaaaatggcaacttca 477
           ||||||||||||||||||||
Sbjct: 658 ttccaaaaatggcaacttca 677


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space:   404889
Effective search space used:   404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)