BAC Information

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BAC

Clone NameMSMg01-377C21
Chromosome3 (Build37)
Map Location 17,850,842 - 17,851,258
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040059, EG383936, LOC622737, ENSMUSG00000074674, LOC100040120, Cypt12
Downstream geneLOC545508, Bhlhb5, Cyp7b1, LOC622921, LOC100040153
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377C21.T7 (MSMg01no377_c21.b1)MSMg01-377C21.TJ (MSMg01no377_c21.g1)
ACCAG482322AG482323
length796794
length of high quality
(start - end)
477 (46 - 522)413 (74 - 486)
definitionCHROMAT_FILE: MSMg01no377_c21.b1 PHD_FILE: MSMg01no377_c21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:16 2005CHROMAT_FILE: MSMg01no377_c21.g1 PHD_FILE: MSMg01no377_c21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCAATTGAGGAATACCAAATGGCTGAGAAGCATCTAAAGAAATGT
TCAACGTCATTAGTCAGCTATTAAAAGCAATGAATTCATGAAATTTTTAG
GCAAATGGATGGAACTAGAAAATATCATCCTGTGTGAGGTAACCCAATCA
CACTCACTGATAAGTGGATATTAGCCCAAAAGCTCGAAATACCGAATATA
CAATTCACAGACCAAATGAAGCTAAATAAGAAGGAAGACCAAGGTATGTA
TACTTTGGTTCCTATAGAAGGGGGAACAAAATACCCATGGGAGGAGATAC
AGAGACAAAGTGTGGAGCAGAGACTGAAGGAAAGGTCATTTACAGACTGC
CTCACCTGGGGATCCATACCATATACAGACACCAAAACCAGACACTATTG
TGGATGCCAAGTGTTTGCTGACAGGAGCCTGATATACTGTCTCCTGAGAG
GCTCTGCCAGAGCCTGACAAATACAGAGGTGGATGCTCTCAGTCAACCAT
TGGACTGAACACAAGGTCCCCCATGAAGGAGCTAGAGAAAGCACCCTCAG
AGCTAAAGGATCTTACAGATTCTTCCCTCTGAGGAATAAATATATTGAAC
CACCCGGTCCTCCCCGATCTCCCATGGGCTTAACCCCCACCCAAAGGGAA
TATTGGAGGGAACCCTAAACTTTTTCTTTCTATTTTTTAAAAAAAAACCC
TTCCTTGCCCCTTTTTTTGTAAAAAAACACCCTCGCCCCTCAATAC
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGGGGTGGGGGGAGGCAGGAGCACCC
TCAGGCTGGCTGTGTAGGGGAGCACTCTTATAGAAGCAGGAAGAGGGGGA
ATGGGATAAGGGGTTTCCAGAGGGGAAAACAGAAAAGGAGATAACATTTG
AAATGTAAATAAATAAAATTTCCAATAAAAATTGAAAACAAGCAAACAAA
AAAAAAACTTGGTTGAGTGATGAGACCTTTCACTCTATGCCTTTTTATTC
ATTAATTTGGAAGGGGAAACCCATACTGCAACCTTAGACAATCTAAAATT
GATACTGTATTTTGAGTTACTAGAGGACATTTAATATGTTATTTTTTCAA
TAAAATTTTATAGAATGAAAGTTAAAATCTACATGGTTTTATGTCACAGG
ACGTTTAGAATGGCTATGTACAGAGTGTGAAAGACTACTAGAGAAGGATG
AGAACAGAATGAAATTTCCTCTGTAAGTTTTTTACTTAACAAGTGTTATT
TGGAACCAGTGGGGGCCAGTAGACCAAAAAAGGGCTTTATTTAAATAAAA
ATCGGAATGGCCTATCTGGTGTAATTTTACAAAAACCCACCTCCCTTTTA
TAAGAAAAAAAAAGCTTTTTGAAAACCCGGGGAAACTATGGCGGGGGAGC
CCCATTGGACAACAAATCCCTCTTTTCCTTTTAACCCCCAACTTTTTTTT
TGGACCCTATCTACGGTCGCGCGACGATTCCCTCCTTTCATCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_c21.g1 MSMg01no377_c21.g1 CHROMAT_FILE:
MSMg01no377_c21.g1 PHD_FILE: MSMg01no377_c21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:16 2005
         (413 letters)



>mm_chr3_17850484_17851300
          Length = 817

 Score =  775 bits (401), Expect = 0.0
 Identities = 412/417 (98%), Gaps = 4/417 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggggtggggggaggcaggagcaccctcaggctggctgtgtaggggagcactcttatag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 caggggtggggggaggcaggagcaccctcaggctggctgtgtaggggagcactcttatag 716

                                                                       
Query: 61  aagcaggaagagggggaatgggataaggggtttccagaggggaaaacagaaaaggagata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 aagcaggaagagggggaatgggataaggggtttccagaggggaaaacagaaaaggagata 656

                                                                       
Query: 121 acatttgaaatgtaaataaataaaatttccaataaaaattgaaaacaagcaaaca---aa 177
           |||||||||||||||||||||||||| ||||||||||||||||||||||||||||   ||
Sbjct: 655 acatttgaaatgtaaataaataaaatatccaataaaaattgaaaacaagcaaacaaacaa 596

                                                                       
Query: 178 a-aaaaaacttggttgagtgatgagacctttcactctatgcctttttattcattaatttg 236
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 acaaaaaacttggttgagtgatgagacctttcactctatgcctttttattcattaatttg 536

                                                                       
Query: 237 gaaggggaaacccatactgcaaccttagacaatctaaaattgatactgtattttgagtta 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 gaaggggaaacccatactgcaaccttagacaatctaaaattgatactgtattttgagtta 476

                                                                       
Query: 297 ctagaggacatttaatatgttattttttcaataaaattttatagaatgaaagttaaaatc 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 ctagaggacatttaatatgttattttttcaataaaattttatagaatgaaagttaaaatc 416

                                                                    
Query: 357 tacatggttttatgtcacaggacgtttagaatggctatgtacagagtgtgaaagact 413
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 tacatggttttatgtcacaggacgtttagaatggctatgtacagagtgtgaaagact 359


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 817
Length adjustment: 9
Effective length of query: 404
Effective length of database: 808
Effective search space:   326432
Effective search space used:   326432
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)