BAC Information

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BAC

Clone NameMSMg01-377D18
Chromosome3 (Build37)
Map Location 74,494,997 - 74,495,425
singlet/doubletsinglet
Overlap genenone
Upstream geneBche, LOC667425, LOC619764, LOC667434, LOC100041551
Downstream geneEG667459, BC050789, Serpini2, Wdr49, Pdcd10, Serpini1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377D18.T7 (MSMg01no377_d18.b1)MSMg01-377D18.TJ (MSMg01no377_d18.g1)
ACCAG482364AG482365
length781816
length of high quality
(start - end)
467 (46 - 512)241 (73 - 313)
definitionCHROMAT_FILE: MSMg01no377_d18.b1 PHD_FILE: MSMg01no377_d18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:21 2005CHROMAT_FILE: MSMg01no377_d18.g1 PHD_FILE: MSMg01no377_d18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGGAGTAAATTACTATTCCCTAGAAATTTAGCATTGATAAATGCA
TAAGTAGTAATATTTTCTTTTCAGGATATTTTCAGGGATTTTGCCTTTTC
TGATTTTCAGAGTCCTTCTCTGTAGCCCTGGGTGATTTAAAGCAACTTGT
GGCTCAAGATGATCTTAAACTTATGGCAAACTGCTTAAGTCCTTTTAGTG
CTAGGGTACAGGTATATGTGGCTATTCCAGGCTTTCTTCTTCTATTCATA
GAGGTGTCACATGAAATGAATGTTTTTAGTACAGCATCTTTTTCTTAACC
TCTAAGCAAAATGGAAGTCATGTTTCTTCAAGCAGTTGTGTACAGAAGAC
AAGATAAATCTGAGGTCTTCCCTGAGTACCTGATGTACAGTAAAAGACTA
TAACTCCTCTAAGTCAGGAACATGTTTGACAGAATCAACAGTTGCCTGGG
TCAGGGTCTCTGAATGTATTTCCACCGGGTTTGAAGGAAGAAACAAACAC
AATGTCTTTTTCTAAATGACAAATGTTCCCTAAAGAACACAGCAACTGCC
TCAGATCCTGAAAATCCTAATTTTTTTATCTTAAAGGGAAATGTGTCCCC
ATTTCCCCGATGTTTCCCTTTGTTTACGAAGTTTCCCGAACCAAACCTGA
ATTTCCCCTTCTTTGGAAAATTTATTCGCCTATTTTTCTTATCTGCCCTC
TGCCTCCTCCTTCTTTTTTTTCCGCTGTGAN
CATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTATGAGCCAGCCAGCAGTGGGTGAAA
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA
AAGAAAGAAAGAAAGAAAGAAAGAAGGAAGGAAGGAAGGAAGGAAGGAAG
GAAGGAAGGATGGAAGGAAAGAAGGAAGGATGAACGAAGAAAAGGAAGGA
AGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAAGGAAGAAAGAAAG
AAAGAAAGAAAGAAAGAAAGAATAGAAAGAAAGAAAGAAAGAAAGAAAGC
AAGCACTACTTAAACTGTTCAGATACCTGCTTGAGAGAACGATTGATCAA
AGTAAAGATGTATGTGTGGTTCCAAGATGATTATAGAGAGTTACTGAGGA
ACTCATACCTGATAATGCAGAGTTTAATGACCATTCTTGGGCCTTCTCTC
TATATCTCGTTGTCTATCCTGCTCACCTCTCCTTGAGACTCTTCCCCTCT
TATTCTTCCTTCCCCCCTCCCCCTTATATTTCTTCCTTGATCGTTTACCC
TTCCATCCCCCCCTTTTTTATATATCATTGTCTCGTTTTTCTTCCCTCCC
CCTTTCCCTCCCCTTTTTCCCTTACTCTCTTCCTCCCCCCTTATTTTATT
GCTCCCTTTTTTTCTCCCTTTACTCTTCTTCTTCTCATTTCCCCCCTCCC
CCCCCACTCCTCCTATTTTTTTTCTTCTCTTTTCTTTCTCCTCTACCTCC
CTTCTTCTCCTTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_d18.b1 MSMg01no377_d18.b1 CHROMAT_FILE:
MSMg01no377_d18.b1 PHD_FILE: MSMg01no377_d18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:21 2005
         (467 letters)



>mm_chr3_74494559_74495425
          Length = 867

 Score =  783 bits (405), Expect = 0.0
 Identities = 423/429 (98%)
 Strand = Plus / Minus

                                                                       
Query: 35  aatttagcattgataaatgcataagtagtaatattttcttttcaggatattttcagggat 94
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 867 aatttagcattgataaatgcataaatagtaatattttcttttcaggatattttcagggat 808

                                                                       
Query: 95  tttgccttttctgattttcagagtccttctctgtagccctgggtgatttaaagcaacttg 154
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 tttgccttttctgattttcagagtccttctctgtagccctgggtgatttaaagcaacttg 748

                                                                       
Query: 155 tggctcaagatgatcttaaacttatggcaaactgcttaagtccttttagtgctagggtac 214
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 747 tggctcaagatgatcttaaacttatggcaaactgcttaagtccttttagtgcttgggtac 688

                                                                       
Query: 215 aggtatatgtggctattccaggctttcttcttctattcatagaggtgtcacatgaaatga 274
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 aggtatatgtggctattccaggctttcttcttctattcatagaggtgtcacatgaaatga 628

                                                                       
Query: 275 atgtttttagtacagcatctttttcttaacctctaagcaaaatggaagtcatgtttcttc 334
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 627 atgtttttagtacagcatctttttcttaaactctaagcaaaatggaagtcatgtttcttc 568

                                                                       
Query: 335 aagcagttgtgtacagaagacaagataaatctgaggtcttccctgagtacctgatgtaca 394
           ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 567 aagcagttgtgtacagaagacaagacaaatctgatgtcttccctgagtacctgatgtaca 508

                                                                       
Query: 395 gtaaaagactataactcctctaagtcaggaacatgtttgacagaatcaacagttgcctgg 454
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 507 gtaaaagactataactcctctaagtcaggaacatgtttgacagaatcaacatttgcctgg 448

                    
Query: 455 gtcagggtc 463
           |||||||||
Sbjct: 447 gtcagggtc 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 867
Length adjustment: 10
Effective length of query: 457
Effective length of database: 857
Effective search space:   391649
Effective search space used:   391649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)