BAC Information

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BAC

Clone NameMSMg01-377E22
Chromosome3 (Build37)
Map Location 141,474,881 - 141,475,267
singlet/doubletsinglet
Overlap geneUnc5c
Upstream geneLOC621343, 4930590L14Rik, Pdha2, LOC100039923
Downstream geneBmpr1b, Gabarapl2-ps3, Pdlim5, Gbp5, Gbp6, Gbp3, Gbp1, Gbp2, EG621605, Ccbl2, Gtf2b, Pkn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377E22.T7 (MSMg01no377_e22.b1)MSMg01-377E22.TJ (MSMg01no377_e22.g1)
ACCAG482420AG482421
length780775
length of high quality
(start - end)		487 (46 - 532)400 (75 - 474)
definitionCHROMAT_FILE: MSMg01no377_e22.b1 PHD_FILE: MSMg01no377_e22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:26 2005CHROMAT_FILE: MSMg01no377_e22.g1 PHD_FILE: MSMg01no377_e22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTCATATATTCTGGATACTATCTTCCAGATGTATAGCTGTCAAAG
ATTTTTTTTCCCAGACTTCCTCCTCAATTGAATTATCATGTCTTTTGCTG
TAAAGAAGCCTTTTCCTCTCAAGAAATTCTGTTTCTCAACTGTTGCTCCA
AATCCTGGTGAAACTAGTATCCTGTACAAAAATTCTTTTACTATGCCTAC
AAATTAAAATATATTTCCTTCTCCTTTAACAGACTCAGGACATCATGTCT
TCTGCTGAGGCCCTTGATCCATTGGAACTGAATTTTATAGTGCATGAGAA
ACATGTCTAATTTTGTTCTACATTTAGCTATCCAAATTTACTGGCACCAT
TTGTTAGACAGTTGGCTTTTATCCAACATATATTTTTTATTTTCTTTGTC
AAAATCATCTGGCAGTATGGCAATGAGATTACAACTGGGTCCACAACTCT
ATTCAGTTGATTGATATATTTGTTTTCTATGTCAGNTACTATGCTGNTCT
CAATGACACTTCTGTAATATAACACGATGTCAGGAATTTTAATAACTCCT
ATAAGAATAATATCATTTACAATTGTTTTGGCTATCCTGAGAATTTTGGT
GCCCCCTGTGGACTTTTAAACCATTCTTTTTATTTCTGGGGAAAAAACGC
CTTAAAAAATATAACCTGTAAACGCGGCTCCTTTACATAACTTATTTTTT
TCCTCCAAAAAAACGTTCTCTCCCACTCAN

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCATCACAGAAACAAGCTGCTTGCACA
ATAACCAATTAAACCCAGGCACTGTCCATGCCAAGCCATTAGCCTGGGCC
ACTTAAGAGGCATAATAAATCCAAGCTCCTTTAAAGGCCTATGAGGAACA
ATGAAGCAGCTCCTGTCTGTGCTCAGGGCTCTCAAAGGCTCTCTGATAGT
AAGATATATCCACATTGGACCCAGTAGAGGAAGGGACATGGAGGCATACC
TGAGAGCCTATGGCTCTTATGTTCTTTCTATACCACCAGAAGTTCTCACT
CTTCAGGATTGTCCAGCCATGTGGCATTTGCCACTTCTCTCCCTGCCCCC
TTTTCTCCTAATGAGCCTTCCAACCCTGGGCGAACTTCCTTCTAGAGAAG
TCTCACAACTAGGATTCTTATCAGTAAAGATCACCAAATCACTGATCACT
AAAGAGAGGGTAGGAAGGAGACAAAACCACCCCTTGTTTCACTCTCTACT
TAAAATATCTGCCCCCGTGCCTAAAGAAAAGAAAAAAAAAAAAAATTCGT
GGACTTCCCAAAAAAATGAAAGGGTTCCCCCTATTCCCGCAAGAAGTGGG
ACACCAGTACCCTGCCACGGGTTCGGTAGGGCTACCCCAAAAAATTTTTT
TCCCCCCAAAAAGAAGTCCCAGGGGGCCCCCCCCCCCCCAAAATTAGGGT
GGGTGTGTTATTTAAACAATTATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_e22.g1 MSMg01no377_e22.g1 CHROMAT_FILE:
MSMg01no377_e22.g1 PHD_FILE: MSMg01no377_e22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:26 2005
         (400 letters)



>mm_chr3_141474468_141475267
          Length = 800

 Score =  683 bits (353), Expect = 0.0
 Identities = 382/399 (95%), Gaps = 12/399 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   catcacagaaacaagctgcttgcacaataaccaattaaacccaggcactgtccatgccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 catcacagaaacaagctgcttgcacaataaccaattaaacccaggcactgtccatgccaa 741

                                                                       
Query: 61  gccattagcctgggccacttaagaggcataataaatccaagctcctttaaaggcctatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gccattagcctgggccacttaagaggcataataaatccaagctcctttaaaggcctatga 681

                                                                       
Query: 121 ggaacaatgaagcagctcctgtctgtgctcagggctctcaaaggctctctgatagtaaga 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ggaacaatgaagcagctcttgtctgtgctcagggctctcaaaggctctctgatagtaaga 621

                                                                       
Query: 181 tatatccacattggacccagtagaggaagggacatggaggcatacctgagagcctatggc 240
           |||||||||||||||||||||            |||||||||||||||||||||||||||
Sbjct: 620 tatatccacattggacccagt------------atggaggcatacctgagagcctatggc 573

                                                                       
Query: 241 tcttatgttctttctataccaccagaagttctcactcttcaggattgtccagccatgtgg 300
           ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 572 tcttatgttctttctataccaccagaaattctcactcttcaggattgtgcagccatgtgg 513

                                                                       
Query: 301 catttgccacttctctccctgcccccttttctcctaatgagccttccaaccctgggcgaa 360
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 512 catttgccacttctctccctgcccccttttctcctaatgagccttccaacactgggcgaa 453

                                                  
Query: 361 cttccttctagagaagtctcacaactaggattcttatca 399
           |||||||||||||||||||||||| ||||||||||||||
Sbjct: 452 cttccttctagagaagtctcacaattaggattcttatca 414


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 800
Length adjustment: 9
Effective length of query: 391
Effective length of database: 791
Effective search space:   309281
Effective search space used:   309281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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