Query= MSMg01no377_n19.b1 MSMg01no377_n19.b1 CHROMAT_FILE:
MSMg01no377_n19.b1 PHD_FILE: MSMg01no377_n19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:12 2005
(444 letters)
>mm_chr3_40979196_40980043
Length = 848
Score = 509 bits (263), Expect = e-148
Identities = 362/441 (82%), Gaps = 71/441 (16%)
Strand = Plus / Minus
Query: 8 attcatttgtccccctcaggttgtgaggcagaataaaccttcattttctcaagttgctta 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 attcatttgtccccctcaggttgtgaggcagaataaaccttcattttctcaagttgctta 531
Query: 68 ttgtcattaaatatctcgtcacagcaatgagaaagtaaataatacactcacaaaccttcg 127
|||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 530 ttgtcactaaatgtctcgtcacagcagtgagaaagtaaataatacactcacaaaccttcg 471
Query: 128 aaatactgacattaacaccaacaaaagtagctgacacttactgagagggattccatggca 187
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 470 aaatactgacagtaacaccaacagaagtagctgacacttactgagagggattccatggca 411
Query: 188 gacactgtgat----atggtctcacctccactgtttcatgtaatcctgtcaagtagatga 243
||||||||||| | ||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 410 gacactgtgattgacagggtctcacctccactgtgtcatgtaatcctgtccagtagatga 351
Query: 244 ggcttagacaaatcaggtgcaggtgtgtcaggtgacagggctaaaaagagacactgagag 303
|||||||||||||||||||||||||||||||||
Sbjct: 350 ggcttagacaaatcaggtgcaggtgtgtcaggt--------------------------- 318
Query: 304 agccaaattctgactagttagggttttactgctgtggacagacaccatgaccaaggcaag 363
||||||||||||||||||||
Sbjct: 317 ----------------------------------------gacaccatgaccaaggcaag 298
Query: 364 tcttataagggcaacatttaatttggcctggcttacaggttcagacgtccagtcctttat 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 tcttataagggcaacatttaatttggcctggcttacaggttcagacgtccagtcctttat 238
Query: 424 catcaaggcaggaacatggca 444
|||||||||||||||||||||
Sbjct: 237 catcaaggcaggaacatggca 217
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 848
Length adjustment: 10
Effective length of query: 434
Effective length of database: 838
Effective search space: 363692
Effective search space used: 363692
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no377_n19.g1 MSMg01no377_n19.g1 CHROMAT_FILE:
MSMg01no377_n19.g1 PHD_FILE: MSMg01no377_n19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:12 2005
(439 letters)
>mm_chr3_40813625_40814463
Length = 839
Score = 833 bits (431), Expect = 0.0
Identities = 437/439 (99%)
Strand = Plus / Plus
Query: 1 acagtgcctcctacaagaaaatacccaacaaaaattggtatccctgttcataaaaaggga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acagtgcctcctacaagaaaatacccaacaaaaattggtatccctgttcataaaaaggga 260
Query: 61 gttcttaagaaacatactaaaaaaacaaaacaaaaaaacctagcaacttagttgtagtag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttcttaagaaacatactaaaaaaacaaaacaaaaaaacctagcaacttagttgtagtag 320
Query: 121 cagagaggactccgtactctacagtaaggagtagagtagaacaggatggaagtaagcgag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagagaggactccgtactctacagtaaggagtagagtagaacaggatggaagtaagcgag 380
Query: 181 tgccatgtgttatctatggcaactgctcactgatgaagctcccccactaagcaaatgtgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgccatgtgttatctatggcaactgctcactgatgaagctcccccactaagcaaatgtgt 440
Query: 241 gtgcctgtgttccaactaatgaagagagcttgtgtaccagttactgatgagagcagactt 300
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 441 gtgcctgtgttccaactaatgaagagagcttgtgtgccagttactgatgagagcagactt 500
Query: 301 tggccttgtgcatatagcttgctgatttgtaaactgtttctatcacacacacacaagtga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggccttgtgcatatagcttgctgatttgtaaactgtttctatcacacacacacaagtga 560
Query: 361 gccacacagtcctgcatgacaaaccagaatctatggtgatgaaaccagcaccctggctaa 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gccacacagtcctgcatgacaaaccagaatctatggtgatgaaaccagcaccctggctat 620
Query: 421 tggggaaggagaagccgaa 439
|||||||||||||||||||
Sbjct: 621 tggggaaggagaagccgaa 639
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space: 356900
Effective search space used: 356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
