BAC Information

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BAC

Clone NameMSMg01-378C02
Chromosome3 (Build37)
Map Location 24,468,971 - 24,469,348
singlet/doubletsinglet
Overlap geneEG635702
Upstream geneEG665189
Downstream geneLOC100039592, Nlgn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-378C02.T7 (MSMg01no378_c02.b1)MSMg01-378C02.TJ (MSMg01no378_c02.g1)
ACCAG483050AG483051
length742759
length of high quality
(start - end)
390 (47 - 436)234 (81 - 314)
definitionCHROMAT_FILE: MSMg01no378_c02.b1 PHD_FILE: MSMg01no378_c02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:33 2005CHROMAT_FILE: MSMg01no378_c02.g1 PHD_FILE: MSMg01no378_c02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATC
CGCGGAATTCCTTGAAGTATTTCAACTGCCTCACATCCAATTAGAGTGGC
TTACTTGAACCAAGCTTTAGAATGTTGTCCTCCACTCTTTTTTATTGCAT
AGTTTTGTAGTTCTATTAATCTCATGTATGAATGGTTTTAACATAAGTCA
TAGCAAATTCTCCAAAGGAAATATAGGTGTAAATTCTGTAGAAGGAAACA
ACTCTAAATATCAGGAATATAAATGAAACAATGACAGACAAATAATGAAT
AAACTAACAAACAAACAAACAAACAAACAATAAACAGGATACCTTAATAC
TTCAGCGCTCATTATGTGGGATCAGCACCTTAGAGCCTGGGATAGTGAAT
CAGTGGTGAGATAAGTGTCATGTATACAGTCCTGAAGTAAGAGAGTCTGT
GATCATGTCAAGGGAAACTCACAGAACAGAAACTATAATTATTACTTGTG
CTGGTGCTGCTCATTTATGATCCAGTAGAGTGTATTTTATATTTATATTG
CTTTGATTTGTTTTAATAAATTGCATTTTTATCCATTTCTTAATTGAGTT
ATGTCCCTCTGATTTGTTATAAAATACTTTTCTTCACTACAGGACTGTGG
GTTTCAATTCCTTGTCAGGTTACATTATACATTCTGCAGCGCAATTTTAT
CAATTAATGATTTATGCCCTCTATGTAATCGTCTGATATTCT
CTCTTCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGCGCC
ACTTTTTAATGGGGTTATTTGATTTTCTGGAGTTTAGCTTCTTGAGTTCT
TTGTGTATATTGGATATTAGTCCCCAATCAGATTACGATTGGTAAAGATC
CTTTCCCAATCTGTTGGGGGCCTTTTTGTCTTATTGACAGTGTCTTTTGT
CTTGCAGAAGCTTTGCAATTTTATGAGTTCCCATTTGTTGATTCAGGAAT
TTTTCCCCTGTACCCATATCTTCGAGGTTTTTCCATACTTTCTCCTCTAT
AAGTTTCAGTGTCTCTGGTTTTATGCGGAGTTCTCTAATCCACTTACATT
TGACCTTATTACATTGCAATAGGATTGTTTTCAATTCCCATCCTCTAACT
TGATACTATCCGTTTGTGCCCCCCCTATTTGTTGATACTTCATATTTTTT
TCCTACGATGGATTTTTGTCTCCCTTTCTATTAATCCCTTGATTTATATT
GCGTGTACTTTTTTCCGTGGTTTCCCCTCCCTTTTCTTTTTGGCTATCTC
CGTTTTCATACATTTATTTTTTAACCCGCTCCTACCTTTCTTCCCCCCTT
CCTTTATCACTTTTTCCTCCCATCCTCCCATTTTTCCTCTCCCTCTTTTT
TTTCTCTCCCCCCCTATCTTACCACTCCTTTCTCTCCCCTTTTTCTCCCC
TCCTCTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no378_c02.b1 MSMg01no378_c02.b1 CHROMAT_FILE:
MSMg01no378_c02.b1 PHD_FILE: MSMg01no378_c02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:33 2005
         (390 letters)



>mm_chr3_24468913_24469701
          Length = 789

 Score =  644 bits (333), Expect = 0.0
 Identities = 369/383 (96%), Gaps = 5/383 (1%)
 Strand = Plus / Minus

                                                                       
Query: 8   ggaattccttgaagtatttcaactgcctcacatccaattagagtggcttacttgaaccaa 67
           |||||||||||||| | | ||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 436 ggaattccttgaag-agtgcaactgcctcacatccaattagactggctttcttgaaccaa 378

                                                                       
Query: 68  gctttagaatgttgtcctccactcttttttattgcatagttttgtagttctattaatctc 127
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gctttagaattttgtcctccactcttttttattgcatagttttgtagttctattaatctc 318

                                                                       
Query: 128 atgtatgaatggttttaacataagtcatagcaaattctccaaaggaaatataggtgtaaa 187
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 atgtatgaatggttttaacgtaagtcatagcaaattctccaaaggaaatataggtgtaaa 258

                                                                       
Query: 188 ttctgtagaaggaaacaactctaaatatcaggaatataaatgaaacaatgacagacaaat 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ttctgtagaaggaaacaactctaaatatcaggaatataaatgaaacaatgacagacaaat 198

                                                                       
Query: 248 aatgaataaactaacaaacaaacaaacaaacaaacaataaacaggataccttaatacttc 307
           |||||||||||    |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 197 aatgaataaac----aaacaaacaaacaaacaaacaagaaacaggataccttaatacttc 142

                                                                       
Query: 308 agcgctcattatgtgggatcagcaccttagagcctgggatagtgaatcagtggtgagata 367
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 agtgctcattatgtgggatcagcaccttagagcctgggatagtgaatcagtggtgagata 82

                                  
Query: 368 agtgtcatgtatacagtcctgaa 390
           ||||||||||| |||||||||||
Sbjct: 81  agtgtcatgtacacagtcctgaa 59


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 390
Length of database: 789
Length adjustment: 9
Effective length of query: 381
Effective length of database: 780
Effective search space:   297180
Effective search space used:   297180
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)